View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_17 (Length: 407)
Name: NF6993_low_17
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 33000715 - 33001115
Alignment:
| Q |
18 |
caacctagttgtatagcttattttataaatagcttaggaaacatagtcaataggcatttaagtaaaccattttgttaagagagaaaaggtgtctcgagta |
117 |
Q |
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| T |
33000715 |
caacctagttgtatagcttattttataaatagcttaggaaacagagtcaataggcatttaagtaaaccattctgttaagagagaaaaggtgcctcgagta |
33000814 |
T |
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| Q |
118 |
cactttgtgattgttcccattccctgaagagctcaatccctattctcatattattttgt------------------aacagttgatactatcaacacgt |
199 |
Q |
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| T |
33000815 |
caccttgtgattgttcccattccctgaagggctcagtccctattctcatattattttgttctttatttccaccatgcaacagttgatactatcaacacgt |
33000914 |
T |
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| Q |
200 |
caagtggttagcatgttatagttgtttcttatctttatgttgttacatccgtaatgctgacagaggtaga--agaccaaatgagtttaaaagaaaagcct |
297 |
Q |
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| T |
33000915 |
caagtggttagcatgttatagttgttccttatctttatgttgttacaccggtaaggctgacagaggtagagaagaccaaatgagtttaaaagaaaatcct |
33001014 |
T |
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| Q |
298 |
agtcttaaaaactaacaaatgttgatgataatccgtcagcgggcgactgacaaaatactggagatggtgagggtacaaagtggagattatgttctgatgt |
397 |
Q |
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| T |
33001015 |
aggcttaaaaactaacaaatgttgatgataatccgtcagcgggcgactgacaaaatactagagatggagagggtacaaagtggggattatgttctgatgt |
33001114 |
T |
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| Q |
398 |
c |
398 |
Q |
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| T |
33001115 |
c |
33001115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 7948583 - 7948905
Alignment:
| Q |
25 |
gttgtatagcttattttataaatagcttaggaaacatagtcaataggcatttaag---taaaccattttgttaagagagaaaaggtgtctcgagtacact |
121 |
Q |
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| T |
7948583 |
gttgtatagcttacattataaatggcttaggaaacagagtcaataggcatttaagaagtaaatcattctgttaagagagaaaaggtgcctcgaatacacc |
7948682 |
T |
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| Q |
122 |
ttgtgattgttcccattccctgaagagctcaatccctattctcatattattttgt------------------aacagttgatactatcaacacgtcaag |
203 |
Q |
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| T |
7948683 |
ttgtgattgcttccattccatgaagggctcagtccctattctcatgttctgttgttctctttttccttcatgcaacatttgattccatcaactaatcaag |
7948782 |
T |
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| Q |
204 |
tggttagcatgttatagttgtttcttatctttatgttgttacatccgtaatgctgacagaggtagaagaccaaatgagtttaaaagaaaagcctagtctt |
303 |
Q |
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| T |
7948783 |
tagttagcatgttatagttgttccttatctttatgtccttacaccggtaaggttgaaggaggtagaagaccaaatgaattt-aaagaaaagcctagt-tt |
7948880 |
T |
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| Q |
304 |
aaaaactaacaaatgttgatgataa |
328 |
Q |
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| T |
7948881 |
ggaaactgacaaatgttgatgataa |
7948905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 7949022 - 7949079
Alignment:
| Q |
342 |
gactgacaaaatactggagatggtgagggtacaaagtggagattatgttctgatgtcc |
399 |
Q |
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| T |
7949022 |
gactgacaaaataatggagatggagagggtacgaaatggggattatgttctgatgtcc |
7949079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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