View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_19 (Length: 393)
Name: NF6993_low_19
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 26017200 - 26017576
Alignment:
| Q |
17 |
actatatagatttattaaacaaatttggaaaggtcttattgaatttatggttaatgggatttacaaaatggatgcatgtgcaaggaccaatatatagtct |
116 |
Q |
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| T |
26017200 |
actatatagatttattaaacaaatttggaaaggtcttattaaatttatggttaatgggatttacaaaatggatacatgtgtaaggaccaatatatagtct |
26017299 |
T |
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| Q |
117 |
aagatttttgtttgtgattggtacaggcnnnnnnnggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaa |
216 |
Q |
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| T |
26017300 |
aagatttttgtttgtgattggtacaggcattttttggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaa |
26017399 |
T |
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| Q |
217 |
tgtgttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaagacagattcagatttcttaaaagaggatctt |
316 |
Q |
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| T |
26017400 |
tgtgttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatctt |
26017499 |
T |
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| Q |
317 |
aatggtggctcttgctgcgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgc |
393 |
Q |
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| T |
26017500 |
aatggtggctcttgctgtgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgc |
26017576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 152 - 390
Target Start/End: Original strand, 26002523 - 26002761
Alignment:
| Q |
152 |
ggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
251 |
Q |
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| T |
26002523 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
26002622 |
T |
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| Q |
252 |
atattgaggaagcagtgaagcatggttacctcaagacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattag |
351 |
Q |
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| T |
26002623 |
atattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaacagcattaattag |
26002722 |
T |
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| Q |
352 |
gaatggtaaccttgttgtgtccaatgcaggcgattgtcg |
390 |
Q |
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| T |
26002723 |
aaatggcaaccttgttatgtccaatgccggtgattgtcg |
26002761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 30373857 - 30374088
Alignment:
| Q |
156 |
tatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatat |
255 |
Q |
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| T |
30373857 |
tatttgatggacatggaggtgccaaagccgctgaatttgcggcaaacaacttagaaaagaacatcttggacgaagttatcatgagcgacaaagatgatgt |
30373956 |
T |
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| Q |
256 |
tgaggaagcagtgaagcatggttacctcaagacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattaggaat |
355 |
Q |
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| T |
30373957 |
tgaggaggcagtgaagcgcggttacctcaataccgattctgagttcatgaaaaaagatctacatggtggttcttgttgtgtgacagcattcattaggaat |
30374056 |
T |
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| Q |
356 |
ggtaaccttgttgtgtccaatgcaggcgattg |
387 |
Q |
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| T |
30374057 |
ggtaacttagttgtgtctaatgctggtgattg |
30374088 |
T |
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