View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_low_2 (Length: 881)

Name: NF6993_low_2
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_low_2
NF6993_low_2
[»] chr7 (3 HSPs)
chr7 (19-120)||(32059085-32059186)
chr7 (212-270)||(28031462-28031520)
chr7 (234-278)||(26554211-26554255)
[»] chr3 (2 HSPs)
chr3 (617-758)||(7732578-7732716)
chr3 (229-284)||(41290740-41290795)
[»] chr4 (2 HSPs)
chr4 (86-137)||(29236552-29236603)
chr4 (128-199)||(39079063-39079138)
[»] chr6 (2 HSPs)
chr6 (236-281)||(14944730-14944775)
chr6 (232-275)||(22607114-22607157)
[»] chr2 (2 HSPs)
chr2 (45-125)||(11116364-11116445)
chr2 (77-140)||(32188351-32188414)
[»] chr8 (1 HSPs)
chr8 (19-137)||(9779847-9779970)
[»] chr5 (2 HSPs)
chr5 (239-281)||(3068162-3068204)
chr5 (86-127)||(3745072-3745113)
[»] chr1 (2 HSPs)
chr1 (76-137)||(27232343-27232404)
chr1 (231-280)||(38703101-38703150)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 32059085 - 32059186
Alignment:
Q  19 caagtgcaacaatgtcctttgcacaagcctcaaacttaaaggggtctcaaagtttgagaaaaaattattgtacctacggataaaatccgtcactaaatat 118  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32059085 caagtgcaacaatgtcctttgcacaggcctgaaacttaaaggggtctcaaaatttgagaaaaaattattgtacctacggataaaatccgtcactatatat 32059184  T
Q  119 ga 120  Q
    ||    
T  32059185 ga 32059186  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 28031462 - 28031520
Alignment:
Q  212 tttttaattatttatacacgaaaattgtcaagattataacggggcctcggaattatcgg 270  Q
    |||| |||||||| || | |||||||||||||||||||||| |||||| ||||||||||    
T  28031462 ttttcaattatttttaaatgaaaattgtcaagattataacgaggcctccgaattatcgg 28031520  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 26554255 - 26554211
Alignment:
Q  234 aattgtcaagattataacggggcctcggaattatcggggacgacc 278  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||    
T  26554255 aattgtcaagattataacggggcctcccaattatcggagacgacc 26554211  T

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Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 617 - 758
Target Start/End: Complemental strand, 7732716 - 7732578
Alignment:
Q  617 agatgttcttgtataatgaatttgtgcaaagaaatacagacattagaagtatgtagtagtaacccaccaacaaaagaaagttcatgtgctggatagaact 716  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||| || ||||||||    
T  7732716 agatgttcttgtataatgattttgtgcaaagaaatacagacattagaagtatgt---agtaacccacc-acaaaagaaagttcatgtgttgaatagaact 7732621  T
Q  717 tggtgattcatctttgtaga-aattttttaatctggtttctta 758  Q
    | |||||||||||||| |||   |||||||||||||| |||||    
T  7732620 tagtgattcatctttgaagatttttttttaatctggtatctta 7732578  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 41290795 - 41290740
Alignment:
Q  229 acgaaaattgtcaagattataacggggcctcggaattatcggggacgaccctgcat 284  Q
    ||||||||| |||| ||||||||||| |||| ||||||||||||||| ||||||||    
T  41290795 acgaaaattatcaaaattataacgggacctccgaattatcggggacggccctgcat 41290740  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 29236552 - 29236603
Alignment:
Q  86 ttgtacctacggataaaatccgtcactaaatatgatttttccataggtaaaa 137  Q
    ||||||||||||| ||||||||||||||||| | |||||||| |||||||||    
T  29236552 ttgtacctacggacaaaatccgtcactaaatgtcatttttccgtaggtaaaa 29236603  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 39079138 - 39079063
Alignment:
Q  128 ataggtaaaaattatattggaaccattgttcatatatt----tacaacttagttgtcagtcactataagtgatgtt 199  Q
    |||||||||||| ||||| |||||||||||||||||||    ||||||||||||||  ||||| ||||||| ||||    
T  39079138 ataggtaaaaatcatatttgaaccattgttcatatatttaactacaacttagttgtgtgtcaccataagtggtgtt 39079063  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 14944730 - 14944775
Alignment:
Q  236 ttgtcaagattataacggggcctcggaattatcggggacgaccctg 281  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||    
T  14944730 ttgtcaaaattataacggggcctccgaattctcggggacgaccctg 14944775  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 22607157 - 22607114
Alignment:
Q  232 aaaattgtcaagattataacggggcctcggaattatcggggacg 275  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||    
T  22607157 aaaattgtcaagattataacagggcctccgaattatcggagacg 22607114  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 11116364 - 11116445
Alignment:
Q  45 gcctcaaacttaaaggggtctcaaagt-ttgagaaaaaattattgtacctacggataaaatccgtcactaaatatgattttt 125  Q
    |||||| ||||| ||| |||||||| | || ||||||||  | |||||||||||||||||||||||||||||| | ||||||    
T  11116364 gcctcacacttagaggagtctcaaaatgtttagaaaaaaaaaatgtacctacggataaaatccgtcactaaatgtcattttt 11116445  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 32188351 - 32188414
Alignment:
Q  77 aaaaaattattgtacctacggataaaatccgtcactaaatatgatttttccataggtaaaaatt 140  Q
    |||||| ||||||||||| ||| |||||| | |||||||||| || ||||| ||||||||||||    
T  32188351 aaaaaaatattgtacctaaggacaaaatctgccactaaatatcatgtttccgtaggtaaaaatt 32188414  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 9779970 - 9779847
Alignment:
Q  19 caagtgcaacaatgtcctttgcacaag-cctcaaacttaaaggggtctcaaagtttgag----aaaaaattattgtacctacggataaaatccgtcacta 113  Q
    |||||||| |||  ||||| ||||||| |||||| |||||||||  |||||| || |||    ||||||  |||| ||||||||| ||||||||||| ||    
T  9779970 caagtgcatcaagttccttggcacaagacctcaagcttaaagggccctcaaatttggaggaaaaaaaaaaaattgaacctacggacaaaatccgtcatta 9779871  T
Q  114 aatatgatttttccataggtaaaa 137  Q
    ||||| ||||| ||||| ||||||    
T  9779870 aatatcattttcccataagtaaaa 9779847  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 3068162 - 3068204
Alignment:
Q  239 tcaagattataacggggcctcggaattatcggggacgaccctg 281  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||    
T  3068162 tcaagattataacagggcctcggaattgtcggggacggccctg 3068204  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 3745113 - 3745072
Alignment:
Q  86 ttgtacctacggataaaatccgtcactaaatatgatttttcc 127  Q
    ||||| |||||||||||||| |||||||||||| ||||||||    
T  3745113 ttgtaactacggataaaatctgtcactaaatatcatttttcc 3745072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 27232404 - 27232343
Alignment:
Q  76 gaaaaaattattgtacctacggataaaatccgtcactaaatatgatttttccataggtaaaa 137  Q
    ||||||| ||||||||||||||  ||| ||||||||||||| |  ||||||| |||||||||    
T  27232404 gaaaaaaatattgtacctacggccaaattccgtcactaaatgtattttttccgtaggtaaaa 27232343  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 38703150 - 38703101
Alignment:
Q  231 gaaaattgtcaagattataacggggcctcggaattatcggggacgaccct 280  Q
    ||||||||||||||||| ||||||| |||  ||||||||| |||||||||    
T  38703150 gaaaattgtcaagattacaacggggactccaaattatcggagacgaccct 38703101  T

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