View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_24 (Length: 357)
Name: NF6993_low_24
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 19103037 - 19102692
Alignment:
| Q |
1 |
ctgcataaactccatttccttccgcaatgtgggatgcactgtctcgttaggatcagttgctatagaactaacatctaaattttgaacaggcgataaaatt |
100 |
Q |
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| T |
19103037 |
ctgcataaactccatttccttccgcaacgtgggatgcactgtcgcgttaggatcagctgctatagaactatcatctaaattttgaacaggcgataaaatt |
19102938 |
T |
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| Q |
101 |
ggtccatgatatgtaagatcatttggtaccacttcatcagtcatatttacaagcggcatgctaaaagaattatgagagatatcaatattgcaatttaccg |
200 |
Q |
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| T |
19102937 |
ggtccatgatatgtaaggtcatttggtaccacttcatcagtcatatttgcaagcggcatgctaaaagaattatgagagatatcaatattgcgatttaccg |
19102838 |
T |
|
| Q |
201 |
taacatctggagaaggtgatatggttgatgtgtcttcctgttgctccgtgtctgcttccatgttggttgtggtatgaatatcgatgtcatggtgctcatt |
300 |
Q |
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| T |
19102837 |
taacatctggagaaggtgatatggttgttgtgtcttcatgctgctccgtgtctgcttccacgttggttgtggtatgaatatcgatgtcatggtgctcatt |
19102738 |
T |
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| Q |
301 |
tatatcatcaacaaccggaatggctgcattgtcaatagattgatgt |
346 |
Q |
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| T |
19102737 |
tatatcatcaacaatcggaatggcagcattgtcaatagattgatgt |
19102692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 168 - 346
Target Start/End: Original strand, 36030634 - 36030812
Alignment:
| Q |
168 |
aattatgagagatatcaatattgcaatttaccgtaacatctggagaaggtgatatggttgatgtgtcttcctgttgctccgtgtctgcttccatgttggt |
267 |
Q |
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| T |
36030634 |
aattctgagagatatcaatattgcgatttaccataacattcagagaaggtgatatggttattgtatcttcctgctgctccgtgtatgcttccacgttgat |
36030733 |
T |
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| Q |
268 |
tgtggtatgaatatcgatgtcatggtgctcatttatatcatcaacaaccggaatggctgcattgtcaatagattgatgt |
346 |
Q |
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| T |
36030734 |
tgtggcattaatatcgatgtcatggtgctcatttatatcatcaacaaccggaatggcaacattgtcaatagattgatgt |
36030812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33952575 - 33952709
Alignment:
| Q |
1 |
ctgcataaactccatttccttccgcaatgtgggatgcactgtctcgttaggatcagttgctatagaactaacatctaaattttgaacaggcgataaaatt |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952575 |
ctgcataaactctatttccttccgcaacgtgggatgcactgtcgcattaggatcaactgctatagaactaacatctaaattttgaacaggcgataaaatt |
33952674 |
T |
|
| Q |
101 |
ggtccatgatatgtaagatcatttggtaccacttc |
135 |
Q |
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| T |
33952675 |
ggtccatgatatgtaaggtcattttgtaccacttc |
33952709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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