View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_29 (Length: 330)
Name: NF6993_low_29
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 121 - 322
Target Start/End: Complemental strand, 36358087 - 36357891
Alignment:
| Q |
121 |
gcctagattgtccttctttcctaaccaacttaaaagccagctactaagagaggattgtaaagggacatggattccaaggcaagatgagaaccaaactagc |
220 |
Q |
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| T |
36358087 |
gcctagattgtccttctttcctaaccaacttaaaagccagctactaagagaggattgtaaagggacatggattccaaggctagatgagaaccaaactagc |
36357988 |
T |
|
| Q |
221 |
ttagcaaaattgcatcccatgaagagatgatgtgctgtttcaatttcagaattacacataggacacagaggttcaattttaatccctttcttacacaggt |
320 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36357987 |
ttagcaaaattgcatcccataaagagatga-----tgtttcagtttcagaattacacataggacacagaggttcaattttaatccctttcttacacaagt |
36357893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 36358586 - 36358470
Alignment:
| Q |
13 |
atcaatcgcaacattagcaacatcannnnnnnaagtgttaatcagtttgaacaccatttggttcctgtaaaaccaaattttccacaaaatagtgcaaaat |
112 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36358586 |
atcaatcgcaacattagtaacatcaggggggaaagtgttaatcagtttgaacaccatttggttcctgtaaaaccaatttttccacaaaatagtgcaaaat |
36358487 |
T |
|
| Q |
113 |
aactgtgagcctagatt |
129 |
Q |
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||||||||||||||||| |
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| T |
36358486 |
aactgtgagcctagatt |
36358470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 313
Target Start/End: Original strand, 35649579 - 35649834
Alignment:
| Q |
58 |
tttgaacaccatttggttcctgtaaaaccaaattttccacaaaatagtgcaaaataactgtgagcctagattgtccttctttcctaaccaacttaaaagc |
157 |
Q |
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||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||| |||||||| |||||||| |
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| T |
35649579 |
tttgaacaccatttgattccaataaaaccacattttccacaaaatagtgcaaaataactgtgagcctaatttatctttcttttctaaccaatttaaaagc |
35649678 |
T |
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| Q |
158 |
cagctactaagagaggattgtaaagggacatggattccaaggcaagatgagaaccaaactagcttagcaaaattgcatcccatgaagagatgatgtgctg |
257 |
Q |
| |
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|||||||||||||| || ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||| || || |||| |
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| T |
35649679 |
cagctactaagagatgagtgtaacgggacatggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgagctg |
35649778 |
T |
|
| Q |
258 |
tttcaatttcagaattacacataggacacagaggttcaattttaatccctttctta |
313 |
Q |
| |
|
||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||| |
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|
| T |
35649779 |
tttcagtttcagaattgcacatcggacacaaaggctcaattttaacccctttctta |
35649834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 40050420 - 40050169
Alignment:
| Q |
58 |
tttgaacaccatttggttcctgtaaaaccaaattttccacaaaatagtgcaaaataactgtgagcctagattgtccttctttcctaaccaacttaaaagc |
157 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||| |||||||| |||||||| |
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| T |
40050420 |
tttgaacaccatttgattcctataaaaccacattttccacaaaatagtgcaaaataactgtgagcctaatttatctttcttttctaaccaatttaaaagc |
40050321 |
T |
|
| Q |
158 |
cagctactaagagaggattgtaaagggacatggattccaaggcaagatgagaaccaaactagcttagcaaaattgcatcccatgaagagatgatgtgctg |
257 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||| || || ||| |
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| T |
40050320 |
cagctactaagagaggagtgtaacgggacatggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgaactg |
40050221 |
T |
|
| Q |
258 |
tttcaatttcagaattacacataggacacagaggttcaattttaatcccttt |
309 |
Q |
| |
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||||| |||||||||| ||||| ||||| | ||| |||||||||| |||||| |
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| T |
40050220 |
tttcagtttcagaattgcacatcggacataaaggctcaattttaaccccttt |
40050169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 14028617 - 14028829
Alignment:
| Q |
97 |
caaaatagtgcaaaataactgtgagcctagattgtccttctttcctaaccaacttaaaagccagctactaagagaggattgtaaagggacatggattcca |
196 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
14028617 |
caaaatagtgcaaaataattgtgagcttaatttatctttcttttctaaccaatttaaaagccagctactaagagaggagtgtaacgggacatggatgcca |
14028716 |
T |
|
| Q |
197 |
aggcaagatgagaaccaaactagcttagcaaaattgcatcccatgaagagatgatgtgctgtttcaatttcagaattacacataggacacagaggttcaa |
296 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||||| || || ||||||||| ||| |||||| ||||| ||||||| ||| |||| |
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| T |
14028717 |
aggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgagctgtttcagttttagaattgcacatcggacacaaaggctcaa |
14028816 |
T |
|
| Q |
297 |
ttttaatcccttt |
309 |
Q |
| |
|
| |||| |||||| |
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| T |
14028817 |
tattaaccccttt |
14028829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 41267966 - 41268097
Alignment:
| Q |
58 |
tttgaacaccatttggttcctgtaaaaccaaattttccacaaaatagtgcaaaataactgtgagcctagattgtccttctttcctaaccaacttaaaagc |
157 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||| |||||||| |||||||| |
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| T |
41267966 |
tttgaacaccatttgattcctataaaaccacattttccacaaaatagtgcaaaataactgtgagcctaatttatctttcttttctaaccaatttaaaagc |
41268065 |
T |
|
| Q |
158 |
cagctactaagagaggattgtaaagggacatg |
189 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |
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| T |
41268066 |
cagctactaagagaggagtgtaacgggacatg |
41268097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 41270926 - 41271050
Alignment:
| Q |
185 |
acatggattccaaggcaagatgagaaccaaactagcttagcaaaattgcatcccatgaagagatgatgtgctgtttcaatttcagaattacacataggac |
284 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||| || || ||||||||| |||||||||| ||||| |||| |
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|
| T |
41270926 |
acatggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgagctgtttcagtttcagaattgcacatcggac |
41271025 |
T |
|
| Q |
285 |
acagaggttcaattttaatcccttt |
309 |
Q |
| |
|
| | ||| |||||||||| |||||| |
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|
| T |
41271026 |
ataaaggctcaattttaaccccttt |
41271050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 48307119 - 48307206
Alignment:
| Q |
60 |
tgaacaccatttggttcctgtaaaaccaaattttccacaaaatagtgcaaaataactgtgagcctagattgtccttctttcctaaccaa |
148 |
Q |
| |
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||||||||||||| ||| | |||||||| ||||| ||||||||| ||||||||||||||||||||| || || |||||| |||||||| |
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| T |
48307119 |
tgaacaccatttgattcttataaaaccacatttttcacaaaata-tgcaaaataactgtgagcctaatttatctttcttttctaaccaa |
48307206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 29847693 - 29847661
Alignment:
| Q |
53 |
atcagtttgaacaccatttggttcctgtaaaac |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
29847693 |
atcagtttgaacaccatttggttcctgtaaaac |
29847661 |
T |
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