View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_3 (Length: 840)
Name: NF6993_low_3
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 115 - 833
Target Start/End: Original strand, 36330835 - 36331558
Alignment:
| Q |
115 |
gttagttagattggacgnnnnnnngttgcaccaaaacttaatatcattttatatatagaagatataatatggagatttaatcaaataactgacacatttg |
214 |
Q |
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| T |
36330835 |
gttagttagattggacgaaaaaaagttgcaccaaaacttaatattgttttatatatagaagatataatatggagatttaatcaaataactgacacatttg |
36330934 |
T |
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| Q |
215 |
aagaaccatgttttgttaaatagcttcatggttttgttacattatgaacaatgttttagttgacattg------tatatttatttatttatcagtgataa |
308 |
Q |
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| T |
36330935 |
aagaaccatgttttgttaaatagcttcatggttttgttacattatgaacaatgttttagttgacattgttattgtatatttatttatttatcagtgatag |
36331034 |
T |
|
| Q |
309 |
aatctcatggaagaaaatttacatatattaaatttttatattaaaataatagaaatgtagcattattcaagctgttcactttcctattcattttccaggt |
408 |
Q |
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| T |
36331035 |
aatctcatggaagaaaatttacatatattaaatttttatattaaaataatagaaatgtagcattattcaagctgttcgctttcctattcattttccaggt |
36331134 |
T |
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| Q |
409 |
ttatattgctgcaattcgcaacagaaatctgccccatcctgcagactctgaagaactatatgaaattgaacatgacaaagaagctgcggtggaaatagag |
508 |
Q |
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| T |
36331135 |
ttatattgctgcaattcgcaacagaaatctgccccatcctgcagactctgaagaactatatgaaattgaacatgacaaagaagctgcggtggaaatagag |
36331234 |
T |
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| Q |
509 |
tatctaccacatagagaaattttcaggttcacttcaactactatccgaaactaacactatatgtcacttgatcatagcttaagcactaaaacgtatgaaa |
608 |
Q |
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| T |
36331235 |
tatctaccacatagagacattttcaggttcacttcaactactatccaaaactaacactatatgtcacttgatcatagcttaagcactaaaacgtatgaaa |
36331334 |
T |
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| Q |
609 |
tactttgacaccgaatgtggcattaaccctggcagtcgataatagtaataatttgnnnnnnntgaattaatttatatagttaatatacacactttcatct |
708 |
Q |
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| T |
36331335 |
tactttgacaccgaatgtggcattaaccctggcagtcgataatagtaataatttg-aaaaaatgaattaatttatatagttaatatacacactttcatct |
36331433 |
T |
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| Q |
709 |
gaaatctcgatgagtaaaaacacttaagtttgatatttggacaacgagtaaaaacacttaagttttatcagcaaaaacgcgtaaaattaatcatgctaac |
808 |
Q |
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| T |
36331434 |
gaaatctcgatgagtaaaaacacttaagtttgatatttggacaacgagtaaaaacacttaagttttatcagcaaaaacgcgtaaaattactcatgctaac |
36331533 |
T |
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| Q |
809 |
atcataaaattgttgcacaggttct |
833 |
Q |
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| T |
36331534 |
atcgtaaaattgttgcacaggttct |
36331558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 398 - 541
Target Start/End: Original strand, 36324031 - 36324174
Alignment:
| Q |
398 |
attttccaggtttatattgctgcaattcgcaacagaaatctgccccatcctgcagactctgaagaactatatgaaattgaacatgacaaagaagctgcgg |
497 |
Q |
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| T |
36324031 |
attttccaggtatacattgctgcaattcgcaacagaaatctgtcccttcctgctgactctggagaactatatgaaattgaacaggacaaagaagctttaa |
36324130 |
T |
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| Q |
498 |
tggaaatagagtatctaccacatagagaaattttcaggttcact |
541 |
Q |
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| T |
36324131 |
tggaaatagagtatctacctcatagagacatttacaggtgcact |
36324174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 36330737 - 36330767
Alignment:
| Q |
17 |
cacttacacggtggtatatccttaaagttgc |
47 |
Q |
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| T |
36330737 |
cacttacacggtggtatatccttaaagttgc |
36330767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 5459303 - 5459381
Alignment:
| Q |
461 |
gaactatatgaaattgaacatgacaaagaagctgcggtggaaatagagtatctaccacatagagaaattttcaggttca |
539 |
Q |
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| T |
5459303 |
gaactatatgaaattgaacaggacaaggaagcttctgaggaaattgagtttctacctcatagagacattttcaggttca |
5459381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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