View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_30 (Length: 326)
Name: NF6993_low_30
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 14546657 - 14546360
Alignment:
| Q |
11 |
agaatatcatcatattcaattcaatagcttcataatatatgttgaatatattacagaaaagcttccaccacatttgcatctacttctgcaccaaatgcct |
110 |
Q |
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| T |
14546657 |
agaatatcatcatattcaattcaatagcttcataatatatgttgaatatattacagaaaagcttccaccacatttgcatctacttctgcaccaaatgcct |
14546558 |
T |
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| Q |
111 |
cctttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaattttcatttaaaaaag |
210 |
Q |
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| T |
14546557 |
cctttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaattttcatttaaaaaag |
14546458 |
T |
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| Q |
211 |
aatacaatgagtgtttctcattatttcaactcgacaagtaactattttcattttaattcaacgtctttccttattctttaagcctatctccaaatttt |
308 |
Q |
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| T |
14546457 |
aatacaatgagtgtttctcattatttcaactcgacaagtaactattttcattttaattcaacgtctttccttattctttaagcctatctccaaatttt |
14546360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 14545639 - 14545723
Alignment:
| Q |
113 |
tttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaattt |
197 |
Q |
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| T |
14545639 |
tttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctagattgttttcatgggtaagttcttcttcttaattt |
14545723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 12098032 - 12097948
Alignment:
| Q |
202 |
ttaaaaaagaatacaatgagtgtttctcattatttcaactcgacaagtaactattttcattttaattcaacgtctttccttattc |
286 |
Q |
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| T |
12098032 |
ttaaaaaagaatacaaggattatttctcatcatttcaaccccacaagtaactattttcatattaacttgacatctttccttattc |
12097948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 12082096 - 12082040
Alignment:
| Q |
233 |
atttcaactcgacaagtaactattttcattttaattcaacgtctttccttattcttt |
289 |
Q |
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| T |
12082096 |
atttcaactcgacaagtcactactttcattttaatttgacatctttccttatccttt |
12082040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 14503062 - 14503130
Alignment:
| Q |
130 |
cttctcaccaatgtt-aagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaatttt |
198 |
Q |
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| T |
14503062 |
cttctcaccaatgttcaagcataatcaatttctagattattttcat-ggtaaattcttctgcttcatttt |
14503130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 30435882 - 30435835
Alignment:
| Q |
13 |
aatatcatcatattcaattcaatagcttcataatatatgttgaatatat |
61 |
Q |
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| T |
30435882 |
aatatcatcatactcaattcaatagcttgataa-atttgttgaatatat |
30435835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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