View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_low_31 (Length: 325)

Name: NF6993_low_31
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_low_31
NF6993_low_31
[»] chr2 (13 HSPs)
chr2 (96-307)||(10248922-10249137)
chr2 (1-95)||(4993604-4993698)
chr2 (1-95)||(4975696-4975790)
chr2 (1-81)||(4976459-4976539)
chr2 (1-81)||(4994366-4994446)
chr2 (49-95)||(41985894-41985940)
chr2 (27-71)||(1271255-1271299)
chr2 (1-65)||(8536167-8536231)
chr2 (1-81)||(41519879-41519959)
chr2 (29-75)||(41768725-41768771)
chr2 (1-71)||(42370904-42370974)
chr2 (1-41)||(8536840-8536880)
chr2 (1-37)||(42369701-42369737)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-100)||(12813-12912)
scaffold0189 (1-95)||(12184-12278)
[»] chr1 (13 HSPs)
chr1 (1-95)||(14925296-14925390)
chr1 (1-88)||(11469719-11469806)
chr1 (1-95)||(11469081-11469175)
chr1 (1-95)||(31787478-31787572)
chr1 (1-95)||(14924674-14924768)
chr1 (1-72)||(31788230-31788301)
chr1 (1-66)||(7464024-7464089)
chr1 (1-66)||(11426882-11426947)
chr1 (1-66)||(11427461-11427526)
chr1 (1-66)||(7463444-7463509)
chr1 (1-66)||(37889908-37889973)
chr1 (1-66)||(37890487-37890552)
chr1 (1-68)||(2687681-2687748)
[»] chr8 (10 HSPs)
chr8 (1-96)||(12350608-12350703)
chr8 (1-95)||(12349967-12350061)
chr8 (3-95)||(43924490-43924582)
chr8 (1-72)||(39257657-39257728)
chr8 (1-72)||(43971301-43971372)
chr8 (1-95)||(43924972-43925066)
chr8 (1-72)||(43972040-43972111)
chr8 (1-65)||(38686333-38686397)
chr8 (8-46)||(39258410-39258448)
chr8 (1-61)||(33802327-33802387)
[»] chr3 (7 HSPs)
chr3 (1-96)||(38337431-38337526)
chr3 (5-95)||(38336944-38337034)
chr3 (3-70)||(44022043-44022110)
chr3 (2-64)||(15450256-15450318)
chr3 (49-95)||(40819701-40819747)
chr3 (49-95)||(40820511-40820557)
chr3 (55-95)||(42108370-42108410)
[»] chr4 (12 HSPs)
chr4 (1-95)||(6246784-6246878)
chr4 (1-90)||(10421535-10421624)
chr4 (1-95)||(6247424-6247519)
chr4 (1-96)||(15481034-15481129)
chr4 (1-91)||(15481524-15481614)
chr4 (1-49)||(10420963-10421011)
chr4 (1-41)||(13856645-13856685)
chr4 (1-61)||(53664246-53664306)
chr4 (49-88)||(1014008-1014047)
chr4 (26-95)||(232028-232097)
chr4 (1-41)||(50709713-50709753)
chr4 (1-61)||(50710371-50710431)
[»] chr6 (1 HSPs)
chr6 (5-101)||(27763407-27763503)
[»] chr5 (7 HSPs)
chr5 (1-68)||(4554684-4554751)
chr5 (1-100)||(4555343-4555442)
chr5 (1-66)||(6805911-6805976)
chr5 (2-69)||(17767546-17767613)
chr5 (29-75)||(6804815-6804861)
chr5 (16-81)||(26712357-26712422)
chr5 (16-81)||(26982095-26982160)
[»] chr7 (3 HSPs)
chr7 (1-70)||(46757449-46757518)
chr7 (53-95)||(46756270-46756312)
chr7 (11-95)||(46759226-46759310)
[»] scaffold0071 (1 HSPs)
scaffold0071 (2-64)||(11873-11935)
[»] scaffold0119 (2 HSPs)
scaffold0119 (27-71)||(29938-29982)
scaffold0119 (27-71)||(36620-36664)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 96 - 307
Target Start/End: Original strand, 10248922 - 10249137
Alignment:
Q  96 tttaagcactcaaaaagaacacctttgaaaatagtcccacaccgcttgttttaaaataatagagagaaacattcatctacaaaagtgcagcccatcacaa 195  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10248922 tttaagcacgcaaaaagaacacctctgaaaacagtcccacaccgcttgttttaaaataatagagagaaagattcatctacaaaagtgcagcccatcacaa 10249021  T
Q  196 cgaacaatgtaaatcatgtgagacatctcctcattggtgggagtat----ctaagaaggacttttgctggatttttccgacaaaacttgtcctttataga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10249022 cgaacaatgtaaatcatgtgagacatctcctcattggtgggagtatctgactatgaaggacttttgctggatttttccgacaaaacttgtcctttataga 10249121  T
Q  292 tcaggtatttgcaatc 307  Q
    ||||||||||||||||    
T  10249122 tcaggtatttgcaatc 10249137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4993698 - 4993604
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||| | | |||| | |||||||||||    
T  4993698 tctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatactaaacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4975790 - 4975696
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||||||| | | |||| | |||||||||||    
T  4975790 tctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4976459 - 4976539
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 81  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| |||||||||| | ||||||    
T  4976459 tctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatcccca 4976539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4994366 - 4994446
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 81  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| |||||||||| | ||||||    
T  4994366 tctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatcccca 4994446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 41985894 - 41985940
Alignment:
Q  49 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 1271299 - 1271255
Alignment:
Q  27 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 71  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 1271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8536231 - 8536167
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaa 65  Q
    ||||||||||||  |||||||||| |||||||||| ||||| |||   |||||||||||||||||    
T  8536231 tctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaa 8536167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41519879 - 41519959
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 81  Q
    |||||| ||||||||||||||||| ||||| ||| ||||||||  |  ||||||||||||| ||| |||||| ||| ||||    
T  41519879 tctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 41768725 - 41768771
Alignment:
Q  29 atctaatggtcaaaattagttttcccatggtggaaaacaacttcact 75  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||    
T  41768725 atctaatggtcaaaattgactttcccatggtgggaaacaacttcact 41768771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42370904 - 42370974
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaactt 71  Q
    |||||||||||| ||| ||||| | |||||||||||| ||| |||   ||||||||||||| |||||||||    
T  42370904 tctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactt 42370974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8536840 - 8536880
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaa 41  Q
    ||||||||||||  |||||||||| ||||||||||||||||    
T  8536840 tctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42369737 - 42369701
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatgg 37  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  42369737 tctatgataaaattatgttctctactttatctaatgg 42369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12813 - 12912
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  12813 tctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaacgccaccattaa 12912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12278 - 12184
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||| ||||||||||| || |||||| ||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  12278 tctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaattaaacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14925296 - 14925390
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||    
T  14925296 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11469719 - 11469806
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||    
T  11469719 tctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaattaaa 11469806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11469175 - 11469081
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||| ||| || |||||||||||||||    
T  11469175 tctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31787572 - 31787478
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||| | | |||| | |||||||||||    
T  31787572 tctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaacgccacc 31787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14924768 - 14924674
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  14924768 tctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaacaccacc 14924674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31788230 - 31788301
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 72  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||  ||||||||||||| ||||||||||    
T  31788230 tctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttc 31788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7464024 - 7464089
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||  | |||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7464024 tctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11426947 - 11426882
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||| | |||||| ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  11426947 tctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11427461 - 11427526
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||  | |||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  11427461 tctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtagaaaac 11427526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7463509 - 7463444
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||| ||||    
T  7463509 tctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37889973 - 37889908
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||| | |||||| ||||| ||||||||||||||||| | ||||||||||||| ||||    
T  37889973 tctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37890487 - 37890552
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||  | |||||||| ||| |||| |||||||||||||||||||||||||| ||||||    
T  37890487 tctatgataaagttgtgttctcttgttaatctgatggtcaaaattagttttcccatggtagaaaac 37890552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2687681 - 2687748
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaa 68  Q
    |||||||||||| |||||||  ||||| ||||||  ||||||| || |||||||||||||| ||||||    
T  2687681 tctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaa 2687748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 12350608 - 12350703
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 96  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  12350608 tctatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12350061 - 12349967
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||    
T  12350061 tctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 43924582 - 43924490
Alignment:
Q  3 tatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||||||||| ||||||    
T  43924582 tatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39257728 - 39257657
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 72  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  39257728 tctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 39257657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43971372 - 43971301
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 72  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  43971372 tctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43924972 - 43925066
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||| ||||||||||| || |||||| |||||||||||  |||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  43924972 tctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43972040 - 43972111
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttc 72  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| ||||||||||    
T  43972040 tctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38686397 - 38686333
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaa 65  Q
    ||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||||||    
T  38686397 tctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaa 38686333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 39258410 - 39258448
Alignment:
Q  8 taaaagtatgttctctagtttatctaatggtcaaaatta 46  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  39258410 taaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33802327 - 33802387
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 61  Q
    ||||||||||||  |||||||||| ||||| |||||||||| |||   |||||||||||||    
T  33802327 tctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgg 33802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38337431 - 38337526
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 96  Q
    |||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38337431 tctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaacgccacct 38337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 38337034 - 38336944
Alignment:
Q  5 tgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  38337034 tgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaatgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 44022043 - 44022110
Alignment:
Q  3 tatgataaaagtatgttctctagttta-tctaatggtcaaaattagttttcccatggtggaaaacaact 70  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  44022043 tatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 15450318 - 15450256
Alignment:
Q  2 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaa 64  Q
    ||||||||||| ||||||||||| || ||||||||||||| ||||  ||||||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 15450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 40819747 - 40819701
Alignment:
Q  49 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  40819747 tttcccatgatggaaaataacttcacttccccatattaaatgccacc 40819701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 40820511 - 40820557
Alignment:
Q  49 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  40820511 tttcccatggtgggaaaaaacttcactgccccatattaaacgccacc 40820557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  55 atggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6246878 - 6246784
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||| |||||| ||| ||| ||||||||||||||||||    
T  6246878 tctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10421535 - 10421624
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacg 90  Q
    |||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  10421535 tctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaattaaacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 6247424 - 6247519
Alignment:
Q  1 tctatgataaaa-gtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  6247424 tctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaattaaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 15481129 - 15481034
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 96  Q
    |||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||  || |||||||||| ||||||||||||||||| |||||    
T  15481129 tctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaacgtcacct 15481034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15481524 - 15481614
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgc 91  Q
    |||||||||||| ||||||||||| || |||||  ||||||||||||||||||||| |||| |||||||||| ||| | ||||||||||||    
T  15481524 tctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaattaaacgc 15481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10421011 - 10420963
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagtt 49  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10421011 tctatgataaaagtatgttatctagtttatctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13856685 - 13856645
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaa 41  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  13856685 tctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 53664306 - 53664246
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 61  Q
    ||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||    
T  53664306 tctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgg 53664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 1014008 - 1014047
Alignment:
Q  49 tttcccatggtggaaaacaacttcacttccccaaattaaa 88  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  1014008 tttcccatggtgggaaacaacttcacttacccaaattaaa 1014047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 232028 - 232097
Alignment:
Q  26 tttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    ||||||||||||| ||||||   ||||||||||||| |||||||||| ||| |||| | ||||| |||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50709753 - 50709713
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaa 41  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  50709753 tctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 50710371 - 50710431
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtgg 61  Q
    |||||||||||   |||||||||| |||||||||||||||| |||   |||||||||||||    
T  50710371 tctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgg 50710431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 27763503 - 27763407
Alignment:
Q  5 tgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaag 101  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||| | ||||| ||||    
T  27763503 tgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaattaaatgtcacctgtaag 27763407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4554751 - 4554684
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaa 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  4554751 tctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaa 4554684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4555343 - 4555442
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaa 100  Q
    |||| ||||||||||||||||| | |||||| || | |||||||||| ||||||||||| | |||||||||| ||| |||| | |||| |||||| ||||    
T  4555343 tctacgataaaagtatgttctccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaatgccacccttaa 4555442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6805911 - 6805976
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaac 66  Q
    |||||||||||| |||||||| | ||  |||| ||||| |||||||||||||||||||||| ||||    
T  6805911 tctatgataaaattatgttcttttgtaaatctgatggttaaaattagttttcccatggtgggaaac 6805976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 17767546 - 17767613
Alignment:
Q  2 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaac 69  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||    ||||||||||||| |||||||    
T  17767546 ctatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaac 17767613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 6804815 - 6804861
Alignment:
Q  29 atctaatggtcaaaattagttttcccatggtggaaaacaacttcact 75  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||    
T  6804815 atctaatggtcaaaattgactttcccatggtgggaaacaacttcact 6804861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  16 tgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 81  Q
    |||||| || || |||| ||||| |||||||| ||||||||||||| |||||||||| ||| ||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  16 tgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttcccca 81  Q
    |||||| || || |||| ||||| |||||||| ||||||||||||| |||||||||| ||| ||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46757518 - 46757449
Alignment:
Q  1 tctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaact 70  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||   |||| |||||||||||||||||    
T  46757518 tctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaact 46757449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 46756312 - 46756270
Alignment:
Q  53 ccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 46759226 - 46759310
Alignment:
Q  11 aagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 95  Q
    |||||||||||||| |||||||||||||||| ||||| ||| | ||| ||| |||||||| | ||| |||| | |||| ||||||    
T  46759226 aagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 11873 - 11935
Alignment:
Q  2 ctatgataaaagtatgttctctagtttatctaatggtcaaaattagttttcccatggtggaaa 64  Q
    ||||||||||| ||||||||||| || ||||||||||||| ||||  ||||||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 29938 - 29982
Alignment:
Q  27 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 71  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactt 29982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  27 ttatctaatggtcaaaattagttttcccatggtggaaaacaactt 71  Q
    ||||||||  |||||||||||||||||||| |||| |||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University