View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6993_low_34 (Length: 321)
Name: NF6993_low_34
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_34 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1026956 - 1027276
Alignment:
| Q |
1 |
ggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1026956 |
ggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccataatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtga |
1027055 |
T |
|
| Q |
101 |
gatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
1027056 |
gatatccagggttgaacctagtttactatgatgagagctttctcttagctatggcttctgctcttggtcgccccattaaggttgatagaaacacactgaa |
1027155 |
T |
|
| Q |
201 |
aattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1027156 |
aattgaacgaggtaaattcgcaagagtttgtgttgagattgatctgactatgccggtcgtaggaaagatttgggtaaacggacattggtacaaagtccag |
1027255 |
T |
|
| Q |
301 |
tacgagggtctccacctaatt |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1027256 |
tacgagggtctccacctaatt |
1027276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 14656847 - 14656527
Alignment:
| Q |
1 |
ggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtga |
100 |
Q |
| |
|
|||||||||||||| || || || || ||| ||||||| |||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||| | |
|
|
| T |
14656847 |
ggcccttggttaatctttgatcactgcctcacagtcacccactggtcgcctgaatttgcatctccgaatgctaaagtggacaaaacaattgtttgggtta |
14656748 |
T |
|
| Q |
101 |
gatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaa |
200 |
Q |
| |
|
|||| ||||| ||||| |||| |||||||| ||||| || | ||||||||||||||||||||| | |||||||| || ||||| |||||||| ||||| |
|
|
| T |
14656747 |
gattcccaggtctgaacttagtgtactatgatgagagtttcttgttagctatggcttctgctcttggccgccccatcaaagttgacacaaacaccctgaa |
14656648 |
T |
|
| Q |
201 |
aattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccag |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| ||||| || |||||||| ||||| | |||||||||||| ||| |
|
|
| T |
14656647 |
aattgaaagaggtaaattcgccagagtctgtgtggaaattgatctgactgtgccggtggtagggaaaatttgggtcaacggactttggtacaaagttcag |
14656548 |
T |
|
| Q |
301 |
tacgagggtctccacctaatt |
321 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
14656547 |
tatgagggtctccacctaatt |
14656527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 35138421 - 35138114
Alignment:
| Q |
1 |
ggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtga |
100 |
Q |
| |
|
||||| |||||||| || || || ||||||||||| |||||||||| || |||||||| ||||||||||| ||||| ||||||||||| || ||||| | |
|
|
| T |
35138421 |
ggcccgtggttaatctttgatcactgtctcgcagtagcacactggactcctgaatttgcttctccaaatgccaaggtagacaaaacaattgtctgggtaa |
35138322 |
T |
|
| Q |
101 |
gatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaa |
200 |
Q |
| |
|
|||||||||| || || || || || ||||| |||||||| || ||||| ||||| ||||||||| | ||||| ||||| || || |||||||| ||||| |
|
|
| T |
35138321 |
gatttccaggtttaaatcttgtgtattatgatgagagcttcctattagccatggcatctgctcttggccgccctattaaagtagacacaaacactctgaa |
35138222 |
T |
|
| Q |
201 |
aattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccag |
300 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| || || || |||||||| ||||| || ||||||||||||||| |
|
|
| T |
35138221 |
aatcgaacgtggtaaatttgcaagagtttgtgttgaaattgatctcactttgccggttgtcggtaaaatttgggttaacggacactggtacaaagtccag |
35138122 |
T |
|
| Q |
301 |
tacgaggg |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
35138121 |
tacgaggg |
35138114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 42406414 - 42406098
Alignment:
| Q |
4 |
ccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagat |
103 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| ||| | || || || || ||||||||||| || ||||| | |||| |||||||||| | | |
|
|
| T |
42406414 |
ccttggttaatttacgaccattgtcttgcagtcacacattggtcccccgagttcgcctctccaaatgccaaagtggaaagaacagtcgtttgggtccgtt |
42406315 |
T |
|
| Q |
104 |
ttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaat |
203 |
Q |
| |
|
||||||| | || ||||| || || ||||| || |||||| |||||||||| || || || | || || || || ||||| || ||||| |||||| | |
|
|
| T |
42406314 |
ttccaggtctaaatctagtctattacgacgaaagttttctcctagctatggcctcagcaattggccgaccaatcaaagttgacacgaacaccctgaaagt |
42406215 |
T |
|
| Q |
204 |
tgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtac |
303 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||| || ||| |||| || || || |||||||||||||| || || ||||||||| | |||||| |
|
|
| T |
42406214 |
tgaacgaggaaaatttgcaagagtctgtgttgagattgacctcactctgccagtagtggggaagatttgggtaaatggacactggtacaaaattcagtac |
42406115 |
T |
|
| Q |
304 |
gagggtctccacctaat |
320 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42406114 |
gagggtctgcacctaat |
42406098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 174231 - 174493
Alignment:
| Q |
43 |
tggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttc |
142 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||| ||| | |||||||| | ||||| || || || || ||||||||||| || |||||| |
|
|
| T |
174231 |
tggactccggaatttgcttctccaaatgcaaaggttgaccgcacagtagtttgggtacgttttcctggtttaaatctcgtttactatgatgaaagctttt |
174330 |
T |
|
| Q |
143 |
tcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattga |
242 |
Q |
| |
|
| | || |||||||| ||||| || | || || |||||||| || || || |||||| ||||| | || |||||||| ||||| |||||||| ||||| |
|
|
| T |
174331 |
tgctcgcaatggcttcggctctaggtaggcctatcaaggttgacaccaataccctgaaagttgaaaggggaaaattcgcgagagtctgtgttgaaattga |
174430 |
T |
|
| Q |
243 |
tctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
305 |
Q |
| |
|
||| ||| | ||||| || || || || ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
174431 |
tctcactgtcccggtggtggggaaaatatgggtgaacggtcactggtacaaggttcagtacga |
174493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8310867 - 8310630
Alignment:
| Q |
1 |
ggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8310867 |
ggcccttagttaatattcgaccattgtcttgcagtcacacactgaatgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttcagtga |
8310768 |
T |
|
| Q |
101 |
gatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaa |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||| |
|
|
| T |
8310767 |
gatttccagggctgaacctagtttactatgacgagagctttctcttagctatggcttctgctcttggccgccccattaagattgatacaa--acactgaa |
8310670 |
T |
|
| Q |
201 |
aattgaacgaggtaaattcgcaagagtttgtgttgagatt |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8310669 |
aattgaacaaggtaaattcgcaagagtttgtgttgagatt |
8310630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 11894128 - 11894445
Alignment:
| Q |
4 |
ccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagat |
103 |
Q |
| |
|
|||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| ||||||||||||| |
|
|
| T |
11894128 |
ccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaactccaaagttgacaaaacaattgtttgggtgagat |
11894227 |
T |
|
| Q |
104 |
ttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaat |
203 |
Q |
| |
|
| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
11894228 |
tcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaat |
11894327 |
T |
|
| Q |
204 |
tgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtac |
303 |
Q |
| |
|
|||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
11894328 |
tgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtac |
11894427 |
T |
|
| Q |
304 |
gagggtctccacctaatt |
321 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11894428 |
gagggtctccacctaatt |
11894445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 8278462 - 8278377
Alignment:
| Q |
236 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatt |
321 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8278462 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatt |
8278377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 8307271 - 8307186
Alignment:
| Q |
236 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatt |
321 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8307271 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatt |
8307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 23421449 - 23421645
Alignment:
| Q |
94 |
tgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaaca |
193 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||| || ||||| || ||||| ||||||||||| | | | || || || || || ||||||| |
|
|
| T |
23421449 |
tgggtcagattcccaggtctgaaccttgtatactatgatgaaagcttccttttagcaatggcttctgcgatcggaagaccaatcaaagtcgacacaaaca |
23421548 |
T |
|
| Q |
194 |
cactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
290 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||||| ||||| || |||||||| || | || |||||||| || |||||||| || || |||||||| |
|
|
| T |
23421549 |
cactgaaagttgaaagaggaaaatttgcaagagtgtgtgtcgaaattgatctcacggtcccagtcgtagggaaaatttgggttaatggtcattggta |
23421645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 53611430 - 53611316
Alignment:
| Q |
119 |
tagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaatt |
218 |
Q |
| |
|
||||||| |||||||| | ||||| || ||||||||||| || || ||||||| || ||||| || |||||||| |||||| | ||| |||| ||||| |
|
|
| T |
53611430 |
tagtttattatgacgaaaattttcttttggctatggcttcagcaattggtcgcccgataaaggtggacacaaacactctgaaagtcgaaagaggaaaatt |
53611331 |
T |
|
| Q |
219 |
cgcaagagtttgtgt |
233 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
53611330 |
tgcgagagtttgtgt |
53611316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 15479860 - 15479784
Alignment:
| Q |
4 |
ccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtgga |
80 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| ||| | | || ||||| ||||||||||| || ||||| |
|
|
| T |
15479860 |
ccttggttaatttacgaccattgtcttgcagtcacacattggtccctcgagtttgcctctccaaatgccaaagtgga |
15479784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 23135752 - 23135435
Alignment:
| Q |
4 |
ccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagat |
103 |
Q |
| |
|
|||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| ||||||||||||| |
|
|
| T |
23135752 |
ccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaattgtttgggtgagat |
23135653 |
T |
|
| Q |
104 |
ttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaat |
203 |
Q |
| |
|
| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
23135652 |
tcccaggtctgaacttagtatactatgatgagagtttcttgctagcaatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaat |
23135553 |
T |
|
| Q |
204 |
tgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtac |
303 |
Q |
| |
|
|||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
23135552 |
tgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtac |
23135453 |
T |
|
| Q |
304 |
gagggtctccacctaatt |
321 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23135452 |
gagggtctccacctaatt |
23135435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 20281829 - 20282146
Alignment:
| Q |
4 |
ccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagat |
103 |
Q |
| |
|
|||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| ||||||||||||| |
|
|
| T |
20281829 |
ccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaattgtttgggtgagat |
20281928 |
T |
|
| Q |
104 |
ttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaat |
203 |
Q |
| |
|
| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
20281929 |
tcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaat |
20282028 |
T |
|
| Q |
204 |
tgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtac |
303 |
Q |
| |
|
|||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
20282029 |
tgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtac |
20282128 |
T |
|
| Q |
304 |
gagggtctccacctaatt |
321 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
20282129 |
gagagtctccacctaatt |
20282146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 50448952 - 50449057
Alignment:
| Q |
89 |
tcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatac |
188 |
Q |
| |
|
|||||||||| |||||||||| ||||||| || ||||| ||||||||||| || ||||| ||||||||||| || |||| || || || ||||| || |
|
|
| T |
50448952 |
tcgtttgggttcgatttccaggtctgaaccttgtctactacgacgagagcttcctattagccatggcttctgcaattggtcgaccgatcaaagttgacac |
50449051 |
T |
|
| Q |
189 |
aaacac |
194 |
Q |
| |
|
|||||| |
|
|
| T |
50449052 |
aaacac |
50449057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 55 - 321
Target Start/End: Original strand, 7810816 - 7811082
Alignment:
| Q |
55 |
tttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatgg |
154 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| |||||||||||||||| ||||||||| ||||| ||||| ||||||||||| || | ||||||| |
|
|
| T |
7810816 |
tttgcatctccagatgccaaagtggatcgcacaatagtttgggtgagatttctagggttgaatctagtctactacgacgagagcttcctgcttgctatgg |
7810915 |
T |
|
| Q |
155 |
cttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgcc |
254 |
Q |
| |
|
|||| || ||| | ||||| || || || || || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
7810916 |
cttcagcacttggccgcccaataaaagtggacactaacacactgaaaattgaaagaggaaaattcgcaagagtctgtgttgaaattgatcttactatgcc |
7811015 |
T |
|
| Q |
255 |
ggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatt |
321 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
7811016 |
ggtagtaggaaaaatttgggttaacggccattggtacaaagtccagtatgagggtcttcacctaatt |
7811082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 23942086 - 23942132
Alignment:
| Q |
112 |
ttgaacctagtttactatgacgagagctttctcttagctatggcttc |
158 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
23942086 |
ttgaacctagtttattatgacgagagctttctcctagctatggcttc |
23942132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 6079 - 6221
Alignment:
| Q |
175 |
attaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttggg |
274 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| | ||||| || || |||||||||| ||| ||||||| || |||||||| | ||||| || |||| |
|
|
| T |
6079 |
attaaggttgacacaaacacgctgaaagttgaaaggggtaagtttgctcgagtttgtgtcgaggttgatctcacaatgccggtgattggaaaaatctggg |
6178 |
T |
|
| Q |
275 |
taaacgggcattggtacaaagtccagtacgagggtctccacct |
317 |
Q |
| |
|
|||| || |||||||| ||||| || || ||||| |||||||| |
|
|
| T |
6179 |
taaatggtcattggtataaagttcaatatgagggcctccacct |
6221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 16772902 - 16772843
Alignment:
| Q |
262 |
ggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatt |
321 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
16772902 |
ggaaagatatgggtgaactgtcattggtacaaagtccagtatgaaggtcttcacctaatt |
16772843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 7590679 - 7590598
Alignment:
| Q |
224 |
gagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
305 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || || || |||||||| || || |||||||||||| | |||||||| |
|
|
| T |
7590679 |
gagtctgtgttgagattgatcttacggtgccggtagtgggtaaaatttgggtcaatggacattggtacaaaatacagtacga |
7590598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 46787558 - 46787437
Alignment:
| Q |
172 |
cccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagattt |
271 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||| |||| |||||||| ||||| || ||||| ||||| || ||| | ||||| || || || || | |
|
|
| T |
46787558 |
cccataaaggttgatactaacactcttaaggttgaaagaggaaaattcgctagagtatgcgttgaaattgaccttactgttccggtggtggggaaaatat |
46787459 |
T |
|
| Q |
272 |
gggtaaacgggcattggtacaa |
293 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
46787458 |
gggtgaacggacattggtacaa |
46787437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University