View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_4 (Length: 810)
Name: NF6993_low_4
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 796
Target Start/End: Complemental strand, 31538554 - 31537758
Alignment:
| Q |
1 |
atgattggctgccttattggtaaaggaggatctattattactgagttgagaaggcttacaaaatccaatattcgcttactgtcaaaggaaaatcttccta |
100 |
Q |
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| T |
31538554 |
atgattggctgccttattggtaaaggaggatctattattactgagatgagaaggcttacaagatccaatattcgcatactgtcaaaggaaaatcttccta |
31538455 |
T |
|
| Q |
101 |
aaattgcttctgatgatgatgaaatggtgcaggtaagggtannnnnnnnnctcactttgtttggaatgttacctttgtgtaataaagatgaacttgtgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31538454 |
aaattgcttctgatgatgatgaaatggtgcaggtaagggtatttttttt-ctcactttgtttggaatgttgcctttgtgtaataaagatgaacttgtgca |
31538356 |
T |
|
| Q |
201 |
agttcttacacgatgagagcaaacctttttgatagaaagggtgctggccctggattccttccagttctaccatatatgcctgctcctgtagatggtccag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31538355 |
agttcttacacgatgagagcaaacctttttgatagagagggttctgtccctggattccttccagttctaccatatattcctgctccagtagatggtccag |
31538256 |
T |
|
| Q |
301 |
atgttcttaactatgacagtagggatggcaaaagacatggacgcgaacattcatattcgagtggctatggaggctcaagtgatttaggacctggcgacac |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31538255 |
atgttcttaactatgacagtagggatggaaaaagacatggacgcggacattcatattcaagtggctatggaggctcaagtgatttaggacctggcgacac |
31538156 |
T |
|
| Q |
401 |
ttatggaagttatgcaagttcacaggtacttctatctaaccaaatttgatttttgaagaacatctgcatgtagctgagctcttttaaagtccaattcaat |
500 |
Q |
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| T |
31538155 |
ttatggaagttatgcaagttcacaggtacttctatctaaccaaatttgatttttgaagaacatttgcatgtagctgagctcttttaaagtccaattcaat |
31538056 |
T |
|
| Q |
501 |
ccattatttttaatactatagcagtgtttgattcaaggttagggaatgagatggacctgttttgaaagtacagaannnnnnnccaatacattgcagagg- |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
31538055 |
ccattatttttaatactatagcagtgtttgattcaaggttagggaatgagatggacttgttttgaaagtacagaa--ttttcccaatacattgcagaggt |
31537958 |
T |
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| Q |
600 |
---ttattggcaactcggaaatggttttttattggcagatcggaggatttaccttctgtatcttggaatggaatgatcatctgttgtgcttgggtaatgg |
696 |
Q |
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| T |
31537957 |
taattattggcaactcggaaatggttttttagtggcagattggacgatttaccttcggtatcttggaatggaatgatcatccgttgtgcttgggtaatgg |
31537858 |
T |
|
| Q |
697 |
ttaaaggtataacagttgtgttgttgtttaagttgtaaatccctctgttctgaattctgatgtaatttagttgcgtattctaatgttaagttgttgatgt |
796 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31537857 |
ttaaaggtataacagttgtgctgttgtttaagttgtaaatccctctgttctgaattctgatgtaatttagttgcatattctaatgttaagttgttgatgt |
31537758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 2896283 - 2896413
Alignment:
| Q |
4 |
attggctgccttattggtaaaggaggatctattattactgagttgagaaggcttacaaaatccaatattcgcttactgtcaaaggaaaatcttcctaaaa |
103 |
Q |
| |
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||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| | || || ||| | || || ||||| |||| ||||||| |
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| T |
2896283 |
attggttgccttattggtaaaggaggatcaatcattactgaaatgagaaggcttacaaaagctaacatccgcatcctatctaaggaggatctccctaaaa |
2896382 |
T |
|
| Q |
104 |
ttgcttctgatgatgatgaaatggtgcaggt |
134 |
Q |
| |
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|||| |||| |||||||||||||||||||| |
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| T |
2896383 |
ttgcaactgaagatgatgaaatggtgcaggt |
2896413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 2896731 - 2896802
Alignment:
| Q |
362 |
tggctatggaggctcaagtgatttaggacctggcgacacttatggaagttatgcaagttcacaggtacttct |
433 |
Q |
| |
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|||||||||||||||||||||||| | | |||||||| |||||||| |||| |||||||||||| ||||| |
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| T |
2896731 |
tggctatggaggctcaagtgattttgtatctggcgacggttatggaaactatggaagttcacaggttcttct |
2896802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 184 - 509
Target Start/End: Original strand, 3867104 - 3867430
Alignment:
| Q |
184 |
aaagatgaacttgtgcaagttcttacacga-tgagagcaaacctttttgatagaaagggtgctggccctggattccttccagttctaccatatatgcctg |
282 |
Q |
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||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
3867104 |
aaagatgctcttgtacaagttcttacacgactgagagcaaacctttttgatagagagggtgctgtccctggattccttccagttctaccatatattcctg |
3867203 |
T |
|
| Q |
283 |
ctcctgtagatggtccagatgttcttaactatgacagtagggatggcaaaagacatggacgcgaacattcatattcgagtggctatggaggctcaagtga |
382 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
3867204 |
ctccagtagatggtccagatgttcttaactatgagagtagggatggcaaaagacatggacgcggacattcatattcaagtggctatggaggctcaagtga |
3867303 |
T |
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| Q |
383 |
tttaggacctggcgacacttatggaagttatgcaagttcacaggtacttctatctaaccaaatttgatttttgaagaacatctgcatgtagctgagctct |
482 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3867304 |
tttaggacctgtcgacacttatggaagctatgcaagttcacaggtacttctatctaaccaaatttgatttttgaagaacatttgcatgtagctgagctct |
3867403 |
T |
|
| Q |
483 |
tttaaagtccaattcaatccattattt |
509 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
3867404 |
ttaaaagtccaattcaatccattattt |
3867430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 3866835 - 3866971
Alignment:
| Q |
4 |
attggctgccttattggtaaaggaggatctattattactgagttgagaaggcttacaaaatccaatattcgcttactgtcaaaggaaaatcttcctaaaa |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3866835 |
attggctgccttattggtaaaggaggatctattataactgagatgagaaggcttacaaaatccaatattcgcatactgtcaaaggaaaatcttcctaaaa |
3866934 |
T |
|
| Q |
104 |
ttgcttctgatgatgatgaaatggtgcaggtaagggt |
140 |
Q |
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| T |
3866935 |
ttgcttctgatgatgatgaaatggtgcaggtaagggt |
3866971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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