View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6993_low_40 (Length: 308)
Name: NF6993_low_40
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 45 - 289
Target Start/End: Original strand, 7108239 - 7108483
Alignment:
| Q |
45 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcgttttttaaaactctagacct |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7108239 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcattttttaaaactctagacct |
7108338 |
T |
|
| Q |
145 |
taacatctttgcccgatccgtatcagaagacgccattctctcaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7108339 |
taacatctttgcccaatccgtatcagaagacgccattctcccaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
7108438 |
T |
|
| Q |
245 |
tccctcctctaatggcttacaaattttttccatgccacaatgact |
289 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7108439 |
tccttcctctaatggcttacaaatttttttcatgccacaatgact |
7108483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 7108025 - 7108062
Alignment:
| Q |
8 |
atggacatcatagcacctgataattcaacaaatatgat |
45 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7108025 |
atggtcatcatagcacctgataattcaacaaatatgat |
7108062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University