View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_43 (Length: 295)
Name: NF6993_low_43
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_43 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 17448207 - 17448501
Alignment:
| Q |
2 |
caaaggaaacgtaagatgagtatggagaaacaaaaggcagtacaagaggagacacataagctggaagaagcaaaa-ttattagagaggtaaagtacccga |
100 |
Q |
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| T |
17448207 |
caaagaaagcgtaagatgagcatggagaaacaaaaggcagtacaagaggaaacgcacaagctggaagaagcaaaacttattagagaggtaaagtacccga |
17448306 |
T |
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| Q |
101 |
cttggttggccaacgtggtgatggtaaagaagccctcaggaaaatggagaatgtgcacggactacactgatctaaatatggtgtgtcccaaggatgctta |
200 |
Q |
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| T |
17448307 |
cctggttggccaacgtagtgatggtgaagaagccctcaagaaaatggagaatgtgcacggactacattgatttaaataaggtgtgtcccaaggatgctta |
17448406 |
T |
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| Q |
201 |
cccactgccgagcatagatcaactggtggataatgcctcaaggtatgaccttctcagcttcatggatgcttattcgggctaccaccaaactcgaa |
295 |
Q |
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| T |
17448407 |
tctgctgccgagcatagatcaactggtagataatgcctcagggtatgacctactcagcttcatggatgcttattcgggctacaaccaaattcgaa |
17448501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 14493644 - 14493350
Alignment:
| Q |
2 |
caaaggaaacgtaagatgagtatggagaaacaaaaggcagtacaagaggagacacataagctggaagaagcaaaatt-attagagaggtaaagtacccga |
100 |
Q |
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| T |
14493644 |
caaagaaagcgtaagatgggtatggagaaacaaaaggcagtacaagaggagacccacaagctggtagaagcaaagtttattagagaggtaaagtagccca |
14493545 |
T |
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| Q |
101 |
cttggttggccaacgtggtgatggtaaagaagccctcaggaaaatggagaatgtgcacggactacactgatctaaatatggtgtgtcccaaggatgctta |
200 |
Q |
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| T |
14493544 |
catggttggccaacgtggtgatagttaagaagctctcaggaaaatggagaatgtgcacggactacactaatctaaataaggtgtgtcccaaggatgctta |
14493445 |
T |
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| Q |
201 |
cccactgccgagcatagatcaactggtggataatgcctcaaggtatgaccttctcagcttcatggatgcttattcgggctaccaccaaactcgaa |
295 |
Q |
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| T |
14493444 |
tcccctgccgagcatagatcaactggtacataacacttcaaggtatgaccttcttagcttcatggatgcttactcgggctacaacaaaattcgaa |
14493350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 86 - 295
Target Start/End: Complemental strand, 12610720 - 12610511
Alignment:
| Q |
86 |
aggtaaagtacccgacttggttggccaacgtggtgatggtaaagaagccctcaggaaaatggagaatgtgcacggactacactgatctaaatatggtgtg |
185 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |
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| T |
12610720 |
aggtaaagtacccgacctggttggccaacgtagtgatggtaaagaagccctcaggaaaatgtagaatgtgcacggactacactaatctaaataaggtgtg |
12610621 |
T |
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| Q |
186 |
tcccaaggatgcttacccactgccgagcatagatcaactggtggataatgcctcaaggtatgaccttctcagcttcatggatgcttattcgggctaccac |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12610620 |
tcccaaggatgcttacccactgccgagcatagatcaactggtggataatgcctcagggtatgaccttctcagcttcatggatgcttattcgggctaccac |
12610521 |
T |
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| Q |
286 |
caaactcgaa |
295 |
Q |
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| T |
12610520 |
caaattcgaa |
12610511 |
T |
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