View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_46 (Length: 288)
Name: NF6993_low_46
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 55102896 - 55102625
Alignment:
| Q |
7 |
cagaacctgtgtgacacagtgagaaaatcaacgaaaaaatatagattagatatgatttacgatttgttgtgttcagttattgagcaccaatgatatttga |
106 |
Q |
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| T |
55102896 |
cagaatctgtgtgacacagtgagaaaatcaatgaaaaaatatagattagatatgatttacgatttgttgtgttcagttattgagcaccaatgatgtttga |
55102797 |
T |
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| Q |
107 |
agggaaatcacaatattttctattaa---------gttattaggcacacatcaatgttttctattaactgtgttaattatcacttttatataaacattgt |
197 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55102796 |
agggaaatcacaatattttctattaactgtgttcagttattaggcacacatcaatgttttctattaactgtgttaattaccacttttatataaacattgt |
55102697 |
T |
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| Q |
198 |
tatgactcactatatctgattaacggcagacagcagtactatatgacacgatagaaaaatcacgaatatcaa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55102696 |
tatgactcactatatctgattaacggcagacagcagtactatatgacacgatagaaaaatcacgaatatcaa |
55102625 |
T |
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