View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_48 (Length: 287)
Name: NF6993_low_48
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 42439216 - 42438944
Alignment:
| Q |
3 |
atcaacatcttacatataataacatcgcctcgcacaatcaattactacggactcaacgcaaactcgattgaaatgcatcaaaacatataataaagaattt |
102 |
Q |
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| T |
42439216 |
atcaacatcttacatataataacatcgcctcgcacaatcaattactacggactcaacgcaaactcgattgaaatgcatcaaaacatataataaagaattt |
42439117 |
T |
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| Q |
103 |
aaaaaatacaaaatcaacatcttacatgccagtggagtttccagatggaacagaagcacgaaacatagctttattagtatacaaatcaacttcaacagtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42439116 |
aaaaaatacaaaatcaacatcttacatgccagtggagtttccagatggaacagaagcacgaaacatagctttattagtatacaaatcaacttcaacagtt |
42439017 |
T |
|
| Q |
203 |
ggaattcctctactatcaagaatttgcctcgctttcactttcgtaatcaccgattgtactccttttttcatat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42439016 |
ggaattcctctactatcaagaatttgcctcgctttcactttcgtaatcaccgattgtactccttttttcatat |
42438944 |
T |
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