View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_low_5 (Length: 810)

Name: NF6993_low_5
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_low_5
NF6993_low_5
[»] chr7 (8 HSPs)
chr7 (375-657)||(48084279-48084561)
chr7 (105-378)||(48083977-48084253)
chr7 (671-736)||(48084601-48084666)
chr7 (235-317)||(48091797-48091879)
chr7 (200-276)||(48066494-48066570)
chr7 (767-800)||(48084686-48084719)
chr7 (245-316)||(1808047-1808118)
chr7 (235-317)||(48074707-48074789)
[»] chr1 (5 HSPs)
chr1 (468-610)||(35377077-35377219)
chr1 (466-635)||(35358405-35358574)
chr1 (501-607)||(35370606-35370712)
chr1 (252-316)||(35377880-35377944)
chr1 (231-316)||(35358962-35359047)
[»] chr4 (2 HSPs)
chr4 (534-613)||(6341675-6341754)
chr4 (251-316)||(6342778-6342843)
[»] chr6 (1 HSPs)
chr6 (512-594)||(7386882-7386964)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 375 - 657
Target Start/End: Original strand, 48084279 - 48084561
Alignment:
Q  375 aattaacacatgtatgattggttggtttggcagatccatatcattcgaatctacaagcagctaaggctatttgaattgtatcagaaaagagtaagtgcac 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084279 aattaacacatgtatgattggttggtttggcagatccatatcattcgaatctacaagcagctaaggctatttgaattgtatcagaaaagagtaagtgcac 48084378  T
Q  475 acattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttccttt 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084379 acattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttccttt 48084478  T
Q  575 ttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtaccgtaaagttctcagggtattat 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48084479 ttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtaccgcaaagttctcagggtattat 48084561  T

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Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 105 - 378
Target Start/End: Original strand, 48083977 - 48084253
Alignment:
Q  105 caacatgtaattttgactaatcatatacttgtttctaacatttgtataattaatgtgctactctattgttaattgcaggtttggagcttgggttagagcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083977 caacatgtaattttgactaatcatatacttgtttctaacatttgtataattaatgtgctactctattgttaattgcaggtttggagcttgggttagagcc 48084076  T
Q  205 tacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084077 tacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattc 48084176  T
Q  305 cagtttgtaagtgtaacattaaactattagtag---taattcaaattgttaaaacattaatataatgctactaaatt 378  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||    
T  48084177 cagtttgtaagtgtaacattaaactattagtagtaataattcaaattgttaaaacattaatataatgctaccaaatt 48084253  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 671 - 736
Target Start/End: Original strand, 48084601 - 48084666
Alignment:
Q  671 ccaattgccaaaagtgttaaaggatatttaataattaatatgaacatggttgcatgtttaacaatg 736  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084601 ccaattgacaaaagtgttaaaggatatttaataattaatatgaacatggttgcatgtttaacaatg 48084666  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 48091797 - 48091879
Alignment:
Q  235 tggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagtg 317  Q
    |||||||  ||| ||| |||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48091797 tggagaggcgctactagttggtgccaattttgcttccgctggcattggaattctcaatgataccggaatccagtttgtaagtg 48091879  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 48066494 - 48066570
Alignment:
Q  200 gagcctacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgg 276  Q
    |||| |||||||||||| ||||||||||| || ||  ||||||||||| ||||||||||||| ||||||||| ||||    
T  48066494 gagcttacacttccatatttgagcccactgcttgtccgagagaagcttgtaattggtgccaattttgcatccactgg 48066570  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 800
Target Start/End: Original strand, 48084686 - 48084719
Alignment:
Q  767 gtgtgtcactttcaaacatgtctagtattatcta 800  Q
    ||||||||||||||||||||||||||||||||||    
T  48084686 gtgtgtcactttcaaacatgtctagtattatcta 48084719  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 1808047 - 1808118
Alignment:
Q  245 cttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 316  Q
    ||||||||||||||||| ||||  || ||||| |||||||| || |||||||||||| | || |||||||||    
T  1808047 cttctaattggtgccaattttggttcagctggaattggaatccttaatgataccggagttcaatttgtaagt 1808118  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 48074707 - 48074789
Alignment:
Q  235 tggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagtg 317  Q
    |||||||  ||| ||| |||||||||| || || || ||||| |||||||||||||||||||| ||| | || ||||||||||    
T  48074707 tggagaggcgctactagttggtgccaatttcgcttctgctggaattggaattctcaatgatactggaattcaatttgtaagtg 48074789  T

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Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 468 - 610
Target Start/End: Complemental strand, 35377219 - 35377077
Alignment:
Q  468 agtgcacacattggttcagaaggagc-aagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttg 566  Q
    |||||||| |||||| |||| | ||| ||||||| ||||| ||| |||| | |||||||||  |||||| ||||| |||||||||||||| |||||||||    
T  35377219 agtgcacatattggtgcagaggaagctaagaaac-tagtccacaaagcaattgtactcatcgttcttggaggcaacgattttgtcaacaattattatttg 35377121  T
Q  567 gttcctttttcagcaagatctcgtcaattttctctcccagatta 610  Q
    || || ||||||||||||||||| ||||||||||| ||||||||    
T  35377120 gtcccattttcagcaagatctcgccaattttctcttccagatta 35377077  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 466 - 635
Target Start/End: Complemental strand, 35358574 - 35358405
Alignment:
Q  466 taagtgcacacattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattattt 565  Q
    |||||||||| |||||| |||| ||||| | | | |||||||||| |||| | ||||||||||  ||||| ||||| ||||||||||| || ||||||||    
T  35358574 taagtgcacaaattggtgcagagggagctaaacaactagtcaacaaagcaattgtactcatcatgcttggaggcaacgattttgtcaataattattattt 35358475  T
Q  566 ggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtac 635  Q
    ||| || |||||||| |||||||| ||||||||||| ||| | ||||||   |||||||| || ||||||    
T  35358474 ggtcccattttcagctagatctcgccaattttctcttccaaactatgtcacctatctcatatctgagtac 35358405  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 35370712 - 35370606
Alignment:
Q  501 ctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctc 600  Q
    |||||||||| |||||| |||||||||| | |||| ||||| |||||||| ||||| ||||||| ||  || ||||||||||||||||| ||||||||||    
T  35370712 ctagtcaacaaagcacttgtactcatcattattggaggcaacgattttgttaacaattattattgggccccattttcagcaagatctcgccaattttctc 35370613  T
Q  601 tcccaga 607  Q
    | |||||    
T  35370612 ttccaga 35370606  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 35377944 - 35377880
Alignment:
Q  252 ttggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 316  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| ||||| || |||||||||    
T  35377944 ttggtgccaattttgcatccgcgggtattggaattctcaatgatactggatttcaatttgtaagt 35377880  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 35359047 - 35358962
Alignment:
Q  231 tagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 316  Q
    ||||||| || || ||| || |||||||||| |||||||| || ||  ||||||||||||||||||||||||| || |||||||||    
T  35359047 tagttggtgaaaaacttttagttggtgccaattttgcatcagcaggtgttggaattctcaatgataccggatttcaatttgtaagt 35358962  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 6341754 - 6341675
Alignment:
Q  534 ggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgt 613  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||||||| ||| | |||| || ||||||||    
T  6341754 ggtgggaatgattttgtgaacaactattatttggttccttactcagccagatctcgtgaatatgctcttcctgattatgt 6341675  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 6342843 - 6342778
Alignment:
Q  251 attggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 316  Q
    |||||||| |||||||| || ||||||||||||||||||||||| || ||| | || |||||||||    
T  6342843 attggtgctaactttgcttctgctgggattggaattctcaatgacactggagttcaatttgtaagt 6342778  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 594
Target Start/End: Complemental strand, 7386964 - 7386882
Alignment:
Q  512 agcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaat 594  Q
    |||||| || ||||| ||| ||||||||||||||||||| || ||||| || ||||| |||| ||| ||||| ||||||||||    
T  7386964 agcacttgttctcataactgttggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcgtcaat 7386882  T

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