View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_51 (Length: 261)
Name: NF6993_low_51
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 11236852 - 11237082
Alignment:
| Q |
19 |
ctcaccatcttcatcttcctcatcaaccattccaactcttccattcgagatcgtagcggagattctctccagacttccggtcaaattcctcatgcaactc |
118 |
Q |
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| T |
11236852 |
ctcaccatcttcatcttcctcatcaaccattccgactcttccattcgagatcgtcgcggagattctctccaggctgccagtcaaatacctcatgcaactc |
11236951 |
T |
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| Q |
119 |
caatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacaccttcacttgtccaccacgcgcctccatctcgtcttagcct |
218 |
Q |
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| T |
11236952 |
caatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacaccttcacgtgtccaccacgcgcctccatctcgtcttagcct |
11237051 |
T |
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| Q |
219 |
tcgccaactcctctcgcaaattcgccctctc |
249 |
Q |
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| T |
11237052 |
tcgccaattcctctcgcaaattcgccctctc |
11237082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 7169553 - 7169404
Alignment:
| Q |
48 |
ttccaactcttccattcgagatcgtagcggagattctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctct |
147 |
Q |
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| T |
7169553 |
ttcccactcttccattcgagattgtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctct |
7169454 |
T |
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| Q |
148 |
catctccgatcccaaattcatcaaaaaacaccttcacttgtccaccacgc |
197 |
Q |
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| T |
7169453 |
tatctccgattcaaaattcgctaagaatcaccttcgcttgtcaaccacgc |
7169404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 7157051 - 7156899
Alignment:
| Q |
48 |
ttccaactcttccattcgagatcgtagcggagattctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctct |
147 |
Q |
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| T |
7157051 |
ttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctcatgcaactccaatgcgtctgtaagtaatggaaatctct |
7156952 |
T |
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| Q |
148 |
catctccgatcccaaattcatcaaaaaacaccttcacttgtccaccacgcgcc |
200 |
Q |
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| T |
7156951 |
catcttcgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgcgcc |
7156899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 7161579 - 7161516
Alignment:
| Q |
80 |
attctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaat |
143 |
Q |
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| T |
7161579 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaat |
7161516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 24722589 - 24722663
Alignment:
| Q |
92 |
cttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattc |
166 |
Q |
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| T |
24722589 |
cttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattcatctcccatcctaaattc |
24722663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 43991292 - 43991338
Alignment:
| Q |
107 |
ctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctc |
153 |
Q |
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| T |
43991292 |
ctcatgcaactccaatgcatctgcaagtcctggaaatctcttatctc |
43991338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 2679242 - 2679178
Alignment:
| Q |
101 |
aaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaatt |
165 |
Q |
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| T |
2679242 |
aaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatt |
2679178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 2687149 - 2687085
Alignment:
| Q |
101 |
aaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaatt |
165 |
Q |
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| T |
2687149 |
aaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatt |
2687085 |
T |
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