View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_52 (Length: 260)
Name: NF6993_low_52
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 33858421 - 33858651
Alignment:
| Q |
19 |
aatttgaatgtttgtaacagtataagtatgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacg |
118 |
Q |
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| T |
33858421 |
aatttgaatttttgtaacagtataagtatgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacg |
33858520 |
T |
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| Q |
119 |
tgcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttctgatcttgttatttggcatcttcaannnnnnncttgctaaat |
218 |
Q |
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| T |
33858521 |
tgcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttctgatcttgttatttggtatcttcaatttttttcttgctaaat |
33858620 |
T |
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| Q |
219 |
ttgcaatgccaacagtgttttatttcttctt |
249 |
Q |
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| T |
33858621 |
ttgcaatgccaacagtgttttatttcttctt |
33858651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 33873289 - 33873431
Alignment:
| Q |
59 |
caatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacgtgcagatttctcttttgcattattttcaggtggattatcc |
158 |
Q |
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| T |
33873289 |
caatcctaaatattaaaagactgggaaaactactttgaagttccaatcgatcaatcaacgtgcagatttctcctttgcactactttcaggtggattatcc |
33873388 |
T |
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| Q |
159 |
aatgtaagtcatatcttctgatcttgttatttggcatcttcaa |
201 |
Q |
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| T |
33873389 |
aatgtaagtcatatctactgatcttgttttttggtatcttcaa |
33873431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 33868805 - 33868935
Alignment:
| Q |
47 |
tgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttcc-aattgatcaatcaacgtgcagatttctcttttgcattattttc |
145 |
Q |
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| T |
33868805 |
tgccaaccactccaatcctaaatacaaaaagacaggaaaaaatactttgaagttttgaattgatcaatcaacgtgcagatttctcttttgcattattttc |
33868904 |
T |
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| Q |
146 |
aggtggattatccaatgtaagtcatatcttc |
176 |
Q |
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| T |
33868905 |
aggtggattatccaatgtaagtcatttcttc |
33868935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 42781595 - 42781638
Alignment:
| Q |
105 |
ttgatcaatcaacgtgcagatttctcttttgcattattttcagg |
148 |
Q |
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| T |
42781595 |
ttgatcaatcaacgtgcagatttctcctttgcgctattttcagg |
42781638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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