View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_56 (Length: 245)
Name: NF6993_low_56
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8278195 - 8277982
Alignment:
| Q |
1 |
atcagcaaataatgacacaataattagcaatgatggtgaaaataatgaattgcatggtgattcgctgctcgtcactagaaaaaagaaaattccaaatagc |
100 |
Q |
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| T |
8278195 |
atcagcaaataatgacacaataattagcattgatggtgaaaataatgaactgcatggtgattggctgctcgtcactagaaaaaagaaaattccaaatagc |
8278096 |
T |
|
| Q |
101 |
cctaccgcatttaccacaaaaaacgttaagccaaaagcctccaatcgctttaatgccctgaatactctgacttcaaaaaacaaagctggtccacccaatc |
200 |
Q |
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| T |
8278095 |
cccatctcatttaccacaaaaactgttaagcaaaaagcctccaatcgctttaatgccctgaatactttgacttcaaaaaacaaagttggtccacctaatt |
8277996 |
T |
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| Q |
201 |
aagttacaaattct |
214 |
Q |
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|||||||||||||| |
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| T |
8277995 |
aagttacaaattct |
8277982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8307004 - 8306791
Alignment:
| Q |
1 |
atcagcaaataatgacacaataattagcaatgatggtgaaaataatgaattgcatggtgattcgctgctcgtcactagaaaaaagaaaattccaaatagc |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8307004 |
atcagcaaataatgacacaataattagcattgatggtgaaaataatgaactgtatggtgattggctgctcgtcactagaaaaaagaaaattccaaatagc |
8306905 |
T |
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| Q |
101 |
cctaccgcatttaccacaaaaaacgttaagccaaaagcctccaatcgctttaatgccctgaatactctgacttcaaaaaacaaagctggtccacccaatc |
200 |
Q |
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| T |
8306904 |
cccatctcatttaccacaaaaactgttaagcaaaaagcctccaatcgctttaatgccctgaatactttgacttcaaaaaacaaagttggtccacctaatt |
8306805 |
T |
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| Q |
201 |
aagttacaaattct |
214 |
Q |
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|||||||||||||| |
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| T |
8306804 |
aagttacaaattct |
8306791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7811289 - 7811374
Alignment:
| Q |
1 |
atcagcaaataatgacacaataattagcaatgatggtgaaaataatgaattgcatggtgattcgctgctcgtcactagaaaaaaga |
86 |
Q |
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||||||| ||||||||| ||||||||||||||||| | ||||||||| |||||||||||| | |||| || ||||||||||||| |
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| T |
7811289 |
atcagcacataatgacaaaataattagcaatgatgagggaaataatgagctgcatggtgattggttgcttgttactagaaaaaaga |
7811374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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