View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6993_low_58 (Length: 241)
Name: NF6993_low_58
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34747020 - 34746797
Alignment:
| Q |
1 |
tctcaatgttgccttcatggaagggctttacctgttttacaatattattattattgcaaggacaaaaatagcatttgagaatatattgagggtgggtggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747020 |
tctcaatgttgccttcatggaagggctttacctgttttacaatattattattattgcaaggacaaaaatagcatttgagaatatattgagggtgggtggg |
34746921 |
T |
|
| Q |
101 |
actcaaaccaaaccatatacttatatacatatgtacatannnnnnnatcattgtcaaatcaaattcgttaccctagagtttaacattgtacaccaagtag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34746920 |
actcaaaccaaaccatatacttatatacatatgtacata-ttttttatcattgtcaaatcaaattcgttaccctagagtttaacattgtacaccaagtag |
34746822 |
T |
|
| Q |
201 |
tgcataaagctatacatatttactg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34746821 |
tgcataaagctatacatatttactg |
34746797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University