View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6993_low_6 (Length: 792)

Name: NF6993_low_6
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6993_low_6
NF6993_low_6
[»] chr2 (16 HSPs)
chr2 (9-792)||(6915171-6915954)
chr2 (162-260)||(10543505-10543603)
chr2 (162-260)||(10471307-10471405)
chr2 (162-260)||(28106207-28106305)
chr2 (162-242)||(27966389-27966469)
chr2 (162-260)||(10859023-10859121)
chr2 (93-149)||(10492777-10492833)
chr2 (98-150)||(28105350-28105402)
chr2 (93-156)||(10463585-10463648)
chr2 (109-156)||(10507349-10507396)
chr2 (93-144)||(10860707-10860758)
chr2 (93-155)||(10474161-10474223)
chr2 (93-149)||(7476566-7476622)
chr2 (93-144)||(10848803-10848854)
chr2 (179-241)||(9081351-9081413)
chr2 (93-150)||(7478731-7478788)
[»] chr7 (9 HSPs)
chr7 (517-621)||(15040241-15040345)
chr7 (625-698)||(15040064-15040137)
chr7 (162-260)||(15044800-15044898)
chr7 (257-347)||(15043971-15044061)
chr7 (89-160)||(15045570-15045641)
chr7 (457-512)||(15041840-15041895)
chr7 (345-407)||(15043792-15043854)
chr7 (700-754)||(15039923-15039977)
chr7 (9-62)||(15047553-15047606)
[»] chr8 (3 HSPs)
chr8 (601-670)||(43895529-43895598)
chr8 (601-670)||(44305953-44306022)
chr8 (94-145)||(44307022-44307073)
[»] chr5 (2 HSPs)
chr5 (463-541)||(35856854-35856932)
chr5 (162-260)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 740; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 9 - 792
Target Start/End: Original strand, 6915171 - 6915954
Alignment:
Q  9 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  109 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtc 6915370  T
Q  209 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915371 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaa 6915470  T
Q  309 gttggagcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa 408  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915471 gttggagcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa 6915570  T
Q  409 attaaggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg 508  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915571 attaaggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg 6915670  T
Q  509 catccggcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaa 608  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915671 catccagcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaa 6915770  T
Q  609 agattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggcaaacaatcatt 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6915771 agattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaacaatcatt 6915870  T
Q  709 tctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccc 792  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6915871 tctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccc 6915954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 242  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 149  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  98 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 150  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 156  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  109 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 156  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 144  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 155  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 149  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 144  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  179 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 241  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  93 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 150  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 517 - 621
Target Start/End: Complemental strand, 15040345 - 15040241
Alignment:
Q  517 gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctg 616  Q
    ||||| |||||||||||||| |||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15040345 gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctg 15040246  T
Q  617 gaggg 621  Q
    |||||    
T  15040245 gaggg 15040241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 625 - 698
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
Q  625 ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggca 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15040137 ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca 15040064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 15044061 - 15043971
Alignment:
Q  257 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaacatatctaag 347  Q
    ||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcagctaacatatttaag 15043971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  89 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 160  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
Q  457 attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc 512  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15041895 attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc 15041840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
Q  345 aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa 407  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||    
T  15043854 aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa 15043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 754
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
Q  700 acaatcatttctggaatgggagaactacacttagatatttatgttaaatgcatta 754  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||| || ||||||    
T  15039977 acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta 15039923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  9 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 62  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 601 - 670
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
Q  601 gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc 670  Q
    ||||||||||||||||||||| |||||||||  ||||||||  | || |||||| |||||||||||||||    
T  43895598 gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc 43895529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 601 - 670
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
Q  601 gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc 670  Q
    ||||||||||||||||||||| |||||||||  ||||||||  | || |||||| |||||||||||||||    
T  44306022 gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc 44305953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  94 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 145  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
Q  463 gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta 541  Q
    ||||| |||||||| ||||| |||| ||||| || ||||||||||||| | || || ||||||||||||||||| ||||    
T  35856854 gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta 35856932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  162 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 260  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University