View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_65 (Length: 214)
Name: NF6993_low_65
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 9234802 - 9234981
Alignment:
| Q |
16 |
gacatcaaaacttctatccttcaatccttttttcttgactcttgacccgtaatacaaacacttcacataagattaacggcattgccacccagaatcgatt |
115 |
Q |
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| T |
9234802 |
gacatcaaaacttctttccttcaatcctgttttcttgactcttgacccctaatacaaacacttcacataagattaacggcattgccacccagaatcgatt |
9234901 |
T |
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| Q |
116 |
tgagaaacaaaactagaaagccttcacatattatcatattgacnnnnnnnnntggaacaatcctatccaaatgtacaaag |
195 |
Q |
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| T |
9234902 |
tgagaaacaaaactagaaagccttcacatattatcatattgacaaaaaaaaatggaacaatcctatccaaatgtacaaag |
9234981 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 9246390 - 9246497
Alignment:
| Q |
27 |
ttctatccttcaatccttttttcttgactcttgacccgtaatacaaacacttcacataagattaacggcattgccacccagaatcgatttgagaaacaaa |
126 |
Q |
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|||| |||||||||||| |||||||||||||| |||| | ||| |||||||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |
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| T |
9246390 |
ttctttccttcaatcctgttttcttgactctttacccctcatataaacacttcacataagatcaacggcattgccatccataatcaatttgagaaacaga |
9246489 |
T |
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| Q |
127 |
actagaaa |
134 |
Q |
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| T |
9246490 |
actagaaa |
9246497 |
T |
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