View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6993_low_9 (Length: 566)
Name: NF6993_low_9
Description: NF6993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6993_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 44371725 - 44372146
Alignment:
| Q |
10 |
attattcttaatgcaaaagtaagccacgtttatatatgatattctttagga--------------ttgtattgattttgcctccaacattaatctaactt |
95 |
Q |
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| T |
44371725 |
attattcttaatgcaaaagtaagccacgtttatatatgatattctttaggaggagacaaaaatgattgtattgattttgcctccaacattaatctaactt |
44371824 |
T |
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| Q |
96 |
caaagctaccatttctaacatataattaattgttcaaatcattttgctaaatttggatt-ggggtgcgtttgtcaaacgtacacttacaataagtcattt |
194 |
Q |
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| T |
44371825 |
caaaactacaatttctaacatataattaattgttcaaatcattttgctaaatttggattgggggtgcgtttgtcaaacgtacacttacattaagtcattt |
44371924 |
T |
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| Q |
195 |
tgggtatgtagacaaaatttgattttgg---------tgactttgtctctatctctttcgtaaccaatcactcgttaaagtcatcaaatctcaaagtcat |
285 |
Q |
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| T |
44371925 |
tgggtatgtagacaaaatttgattttggtggcattcatgactttgtctctatctctttcgtaaccaatcactcgttaaagtcatcaaatctcaaagtcat |
44372024 |
T |
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| Q |
286 |
cctaggaccactaaaactnnnnnnnacgactcttggttcgaacccgataaaagtgtcaaaatctaacaataccgacattgtcaattgaactaggtttaca |
385 |
Q |
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| T |
44372025 |
cctaggaccactaaaactccgccccacgacccttggttctaacccgataaaagtgtc-aaatctaacaataccgacattgtcaattgaactaggtttata |
44372123 |
T |
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| Q |
386 |
tagtacattaagtcattcttaac |
408 |
Q |
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| T |
44372124 |
tagtacattaagtcattcttaac |
44372146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 473 - 552
Target Start/End: Original strand, 44372251 - 44372330
Alignment:
| Q |
473 |
gatgatatgaattataccttcttgagggataatgctagggttttggaagtgaacttctccatactatcaaaagcttttct |
552 |
Q |
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| T |
44372251 |
gatgatatgaattataccttcttgagggataatgctagggttttggaagtgaacttctccatactatcaaaagcttttct |
44372330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 1331110 - 1331068
Alignment:
| Q |
216 |
attttggtgactttgtctctatctctttcgtaaccaatcactc |
258 |
Q |
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| T |
1331110 |
attttggtgacattgtgtctatctctctcgtaaccaatcactc |
1331068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 21835974 - 21836013
Alignment:
| Q |
214 |
tgattttggtgactttgtctctatctctttcgtaaccaat |
253 |
Q |
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| T |
21835974 |
tgattttggtgactttgtctctatctctttcctaaccaat |
21836013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 7537088 - 7537042
Alignment:
| Q |
212 |
tttgattttggtgactttgtctctatctctttcgtaaccaatcactc |
258 |
Q |
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| T |
7537088 |
tttgagtttggtgactttgtctctatctctctcctaaccaatcactc |
7537042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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