View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6994_low_2 (Length: 385)
Name: NF6994_low_2
Description: NF6994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6994_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 43568481 - 43568749
Alignment:
| Q |
17 |
agctactccagaaatcaaacttgtccaactaattacatccttctctttcatttccttgaaaacccggacagctttctcaacattaccacatcttgcatac |
116 |
Q |
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| T |
43568481 |
agctactccagaaatcaaacttgtccaactaattacatccttctctttcatttcctcgaaaacccggacagctttctcaacattcccacatcttgcatac |
43568580 |
T |
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| Q |
117 |
atatcaacgatcgccgtcccaagaatcacattcaaatccaaattaattctaatcgcatgctcataagctttctccccagccgcaagagcacctaaatgag |
216 |
Q |
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| T |
43568581 |
atatcaacgatcgccgtcccaagaatcacattcaaatccaaattaattctaatcgcatgctcataagctttctccccagccgcaagagcacctaaatgag |
43568680 |
T |
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| Q |
217 |
cacaagcagataccgcaccaacctcattagccaccaacccttcatctataagaatctcaaatatttcaa |
285 |
Q |
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| T |
43568681 |
cacaagcagataccgcaccaacctcattagccaccaacccttcatctataagaatctcaaatatttcaa |
43568749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 43569221 - 43569282
Alignment:
| Q |
282 |
tcaatgcagaaagcaatgattcgacttgatgcaaaaacgtcgaagaaaagatgcgttcttag |
343 |
Q |
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| T |
43569221 |
tcaatgcagaaagcaatgattcgacttgatggaaaaacgtcgaagaaaatatgcgttcttag |
43569282 |
T |
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