View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6994_low_3 (Length: 266)

Name: NF6994_low_3
Description: NF6994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6994_low_3
NF6994_low_3
[»] chr6 (1 HSPs)
chr6 (1-248)||(25521851-25522098)
[»] chr4 (1 HSPs)
chr4 (1-237)||(11119097-11119333)
[»] chr5 (8 HSPs)
chr5 (1-247)||(34239387-34239633)
chr5 (120-236)||(42124646-42124762)
chr5 (1-149)||(42129902-42130050)
chr5 (120-248)||(34231634-34231762)
chr5 (146-247)||(41712465-41712565)
chr5 (1-67)||(41712561-41712627)
chr5 (3-89)||(42124529-42124615)
chr5 (46-103)||(41570984-41571041)
[»] chr2 (2 HSPs)
chr2 (120-248)||(12249620-12249748)
chr2 (34-155)||(32680976-32681101)
[»] chr3 (1 HSPs)
chr3 (1-140)||(8524057-8524196)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 25522098 - 25521851
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522098 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 25521999  T
Q  101 aatataacaacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatccc 200  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25521998 aatataacaacttaagaccagtcaatttaaataacgaagatggaatctgtccttctaatttgttaaaatatagatcgagttcttgcaatttggtcatccc 25521899  T
Q  201 actgaacacatctgggatttgacctctaaatgaattgtatgaaagatc 248  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||    
T  25521898 accgaacacgtctgggatttgacctctaaatgaattgtatgaaagatc 25521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11119097 - 11119333
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 100  Q
    ||||||||||||| ||||||||||| ||| || ||||  |||||||||||||||||| |||||||||| || |  ||||| |||||||||||||||||||    
T  11119097 attgttccatttatcaagttgtcatttaatctcaaatttgttagcttttggaaccctgtaattttgttgggcaggggaccatctaatttattattagaac 11119196  T
Q  101 aatataa--caacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatc 198  Q
    ||  |||  ||||  |||   |||||||||||||||||| |||||||||||||||||||| |||||| ||| ||  ||||||||||||||||| ||||||    
T  11119197 aacctaatgcaac--aagttgagtcaagttaaataatgatgatggaatttgtccttctaacttgttataatctaagtcgagttcttgcagttttgtcatc 11119294  T
Q  199 ccactgaacacatctgggatttgacctctaaatgaattg 237  Q
    ||||  ||||||||||| ||| |||| ||||||| ||||    
T  11119295 ccaccaaacacatctggtattggaccgctaaatgcattg 11119333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 34239633 - 34239387
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 100  Q
    ||||||||||||| ||||||||||| ||| || |||| | |||||||||| || |||  |||||| ||| |||  ||||||||||||||||||| || ||    
T  34239633 attgttccatttagcaagttgtcatttaacctcaaataaattagcttttgaaaacctgcaattttattatgtagtggaccctctaatttattataagcac 34239534  T
Q  101 aatataa--caacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatc 198  Q
    ||| |||  ||||  |||   | |||||||||||||||||||||||||||||||||||||||||||| ||  ||||| || | |||||||||||||||||    
T  34239533 aatctaaatcaac--aagttgattcaagttaaataatgaagatggaatttgtccttctaatttgttagaagctagatagaatacttgcagtttggtcatc 34239436  T
Q  199 ccactgaacacatctgggatttgacctctaaatgaattgtatgaaagat 247  Q
    | ||  || ||||||||||||||||| |||| |||||||  ||||||||    
T  34239435 ctaccaaatacatctgggatttgaccgctaagtgaattgcctgaaagat 34239387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 42124646 - 42124762
Alignment:
Q  120 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 219  Q
    |||||||||||||| |||||||||||||||||||||||| |||||  ||  || |||||||||||||||||||||||||||||  |||||||||||||||    
T  42124646 agtcaagttaaatagtgaagatggaatttgtccttctaaattgttggaagttaaatcgagttcttgcagtttggtcatcccaccaaacacatctgggatt 42124745  T
Q  220 tgacctctaaatgaatt 236  Q
    ||||| |||||||||||    
T  42124746 tgaccactaaatgaatt 42124762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 42129902 - 42130050
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 100  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||| |||||||||| || ||||||| ||||  ||||||||||||||||| |||||||    
T  42129902 attgttccatttaacaagttgtcatttaatctcaaatcatttagctcttggaaccctgtagttttgttgggtatgggaccctctaatttatttttagaac 42130001  T
Q  101 aatataacaacttaagaccagtcaagttaaataatgaagatggaatttg 149  Q
    ||| |||    | |||   | ||||||||||||||||||||||||||||    
T  42130002 aatctaatgtataaagttgattcaagttaaataatgaagatggaatttg 42130050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 34231762 - 34231634
Alignment:
Q  120 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 219  Q
    |||||| |||||||| |||  ||||||||||||| |||| |||||  ||||||||  |||||||||||||||||||||||| |  || |||||||| |||    
T  34231762 agtcaacttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatcccgccaaatacatctggaatt 34231663  T
Q  220 tgacctctaaatgaattgtatgaaagatc 248  Q
    ||||| || ||||||||||||||||||||    
T  34231662 tgaccgcttaatgaattgtatgaaagatc 34231634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 41712565 - 41712465
Alignment:
Q  146 tttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattgtatgaaag 245  Q
    ||||||||| ||| |||||| | | |||||  |||||||||| ||||||||||||||  ||||||||||| |||||||| |||||||||||| |||||||    
T  41712565 tttgtccttttaaattgttagactctagatacagttcttgca-tttggtcatcccaccaaacacatctggtatttgaccgctaaatgaattgaatgaaag 41712467  T
Q  246 at 247  Q
    ||    
T  41712466 at 41712465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41712627 - 41712561
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgt 67  Q
    |||| |||||||||||||||| ||| ||||   |||| ||||||||||||||||||| |||||||||    
T  41712627 attgctccatttaacaagttgccatttaaatacaaattagttagcttttggaaccctgtaattttgt 41712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 42124529 - 42124615
Alignment:
Q  3 tgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaattt 89  Q
    ||||||||||| ||||||||| | |||| | ||||   ||||||||||||  ||| |||||||||| ||||  ||||||||||||||    
T  42124529 tgttccatttagcaagttgtcttttaaattcaaatacattagcttttggagtcctgtaattttgttgggtaggggaccctctaattt 42124615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 41571041 - 41570984
Alignment:
Q  46 ttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaat 103  Q
    ||||| |||||| | |||||||| |||| |||||||| ||||||||||| ||||||||    
T  41571041 ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaat 41570984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 12249620 - 12249748
Alignment:
Q  120 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 219  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||  ||  ||||| |||||||||||||||||||||| |||| ||||||||||| |||    
T  12249620 agtcaagttaaataatgaaaacggaatttgtccttgtaatttgtttgaagctagattgagttcttgcagtttggtcatcgcactaaacacatctggtatt 12249719  T
Q  220 tgacctctaaatgaattgtatgaaagatc 248  Q
    ||||| |||||||||||| ||||||||||    
T  12249720 tgaccgctaaatgaattgaatgaaagatc 12249748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 32681101 - 32680976
Alignment:
Q  34 aaatcagttagcttttggaaccctataattttgt----taggtaaaggaccctctaatttattattagaacaatataa--caacttaagaccagtcaagt 127  Q
    ||||||||||||||||||||||||  ||||||||    || ||| |||||||||||||||||||| |||||||| |||  ||||  ||||  ||||||||    
T  32681101 aaatcagttagcttttggaaccctgcaattttgttctgtatgtataggaccctctaatttattatgagaacaatctaatgcaac--aagatgagtcaagt 32681004  T
Q  128 taaataatgaagatggaatttgtccttc 155  Q
    ||||||||||| ||||||||| ||||||    
T  32681003 taaataatgaatatggaatttctccttc 32680976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8524057 - 8524196
Alignment:
Q  1 attgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaac 100  Q
    ||||| ||||||| ||||||||||| ||| |  |||| |||||||||||| |  ||| || ||||||| ||||| ||||| ||||||||||||| |||||    
T  8524057 attgtaccatttagcaagttgtcatttaatcgcaaattagttagcttttgaagacctgtagttttgttgggtaagggaccatctaatttattatgagaac 8524156  T
Q  101 aatataacaacttaagaccagtcaagttaaataatgaaga 140  Q
    ||| |||      ||||  |||||||||||||||||||||    
T  8524157 aatctaaagtaacaagatgagtcaagttaaataatgaaga 8524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University