View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6994_low_4 (Length: 263)
Name: NF6994_low_4
Description: NF6994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6994_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 41333415 - 41333645
Alignment:
| Q |
15 |
ctgtggtggcaaaagtttcacaaggggaagctcacttatactaggccttacctgattgaaatcatgtactcggataatatacagatatccaatcttactt |
114 |
Q |
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| T |
41333415 |
ctgtggtggcaaaagtttcacaaggggaagctcacttatactaggccttacctgattgaaatcatgtactcggataatatacagatatccaatcttactt |
41333514 |
T |
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| Q |
115 |
tggttaattctccatcctggaatgtccatcctgtttacagcaggttcatctttttctctttgcaatgtctattatcaatctactatattgttctaagtat |
214 |
Q |
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| T |
41333515 |
tggttaattctccatcctggaatgtccatcctgtttacagcaggttcatctttttctctttgcaatgtctattatcaatctactatattgttctaagtat |
41333614 |
T |
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| Q |
215 |
tttaacataaagaaattgaatgcagcaacat |
245 |
Q |
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| T |
41333615 |
tttaacataaagaaattgaatgcagcaacat |
41333645 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 29764837 - 29764878
Alignment:
| Q |
118 |
ttaattctccatcctggaatgtccatcctgtttacagcaggt |
159 |
Q |
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| T |
29764837 |
ttaattctccatcatggaatgttcatcctgtttacagcaggt |
29764878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 45075774 - 45075668
Alignment:
| Q |
54 |
actaggccttacctgattgaaatcatgtactcggataatatacagatatccaatcttactttggttaattctccatcctggaatgtccatcctgtttaca |
153 |
Q |
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| T |
45075774 |
actaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtccatccagtttaca |
45075675 |
T |
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| Q |
154 |
gcaggtt |
160 |
Q |
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||||||| |
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| T |
45075674 |
gcaggtt |
45075668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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