View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_high_11 (Length: 320)
Name: NF6995_high_11
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3909107 - 3908804
Alignment:
| Q |
1 |
agatggaggaatcaaagtcaaccctcgtggttgagaggtaaacattggtcctgatccattaccacctagttgaaagaattgttgcggaggtggacgattt |
100 |
Q |
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| T |
3909107 |
agatggaggaatcaaattcaaacctcgtggttgagaggtaaacattggtcctgatccattaccacctagttgaaagaattgttgcggaggtggacgattt |
3909008 |
T |
|
| Q |
101 |
tgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggctcaaatttgaagaagaaccaagaccaagaccaactccaacac |
200 |
Q |
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| T |
3909007 |
tgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggctcaaatttgaagaagaaccaagaccaagaccaactccaacac |
3908908 |
T |
|
| Q |
201 |
caagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaatttaaagaatgattaaatgccgcaaaaggcgacatgtaaccaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3908907 |
caagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaatttaaagaatgattaaatgcagcaaaaggcgacatgtaaccaac |
3908808 |
T |
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| Q |
301 |
aaca |
304 |
Q |
| |
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|||| |
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| T |
3908807 |
aaca |
3908804 |
T |
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