View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_high_5 (Length: 444)
Name: NF6995_high_5
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 5681526 - 5681793
Alignment:
| Q |
10 |
gcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgcacgtgcttatgatactgctgtgttttatc |
109 |
Q |
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| T |
5681526 |
gcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgcacgtgcttatgatactgctgtgttttatc |
5681625 |
T |
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| Q |
110 |
ttagaggtccttctgcaaaccttaattttcctgaattgttgttcaaagatcaacaagaagatgaagaaaatctacaacaacatgggaatatgtcggctga |
209 |
Q |
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| T |
5681626 |
ttagaggtccttctgcaaaccttaattttcctgaattgttgttcaaagatcaacaagaagatgaagaaaatctacaacaacatgggaatatgtcggctga |
5681725 |
T |
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| Q |
210 |
ttcaataaggaaaaaagctacacaagttggtgctagagttgatgctcttgaaactaattctctaatta |
277 |
Q |
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| T |
5681726 |
ttcaataaggaaaaaagctgcacaagttggtgctagagttgatgctattgaaactaattctctaatta |
5681793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 301 - 430
Target Start/End: Original strand, 5681814 - 5681943
Alignment:
| Q |
301 |
gtttcttccaataatcatgttcactccaattctacttcttctctcaaacctgacttgaatgagtttccaaaacctgaagattgttgatcatgcaaggtat |
400 |
Q |
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| T |
5681814 |
gtttcttccaataatcatgttcactccaattctacttcttctctcaaacctgacttgaatgagtttccaaaacctgaagattgttgatcgtgcatggtat |
5681913 |
T |
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| Q |
401 |
tatatttgtttcaacaatttacaacatatc |
430 |
Q |
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| T |
5681914 |
tatatttgttacaacaatttgcaacatatc |
5681943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 47038484 - 47038429
Alignment:
| Q |
7 |
gtagcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacat |
62 |
Q |
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| T |
47038484 |
gtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacat |
47038429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 47038292 - 47038233
Alignment:
| Q |
199 |
atgtcggctgattcaataaggaaaaaagctacacaagttggtgctagagttgatgctctt |
258 |
Q |
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| T |
47038292 |
atgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgctctt |
47038233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 32669905 - 32669953
Alignment:
| Q |
11 |
cagagattagagaaccaaacaaaagatcaagaatttggttaggttctta |
59 |
Q |
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|||||||||||| |||||| ||| | |||||||||||||||||||||| |
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| T |
32669905 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttctta |
32669953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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