View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6995_low_1 (Length: 861)

Name: NF6995_low_1
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6995_low_1
NF6995_low_1
[»] chr3 (26 HSPs)
chr3 (458-794)||(25348786-25349115)
chr3 (13-437)||(25348384-25348802)
chr3 (459-552)||(30956661-30956754)
chr3 (459-552)||(30972473-30972566)
chr3 (459-616)||(53789433-53789589)
chr3 (480-578)||(901887-901985)
chr3 (460-528)||(35959515-35959583)
chr3 (480-581)||(20170486-20170587)
chr3 (459-577)||(3845572-3845690)
chr3 (459-581)||(20880419-20880540)
chr3 (462-579)||(44061032-44061148)
chr3 (459-586)||(18405832-18405960)
chr3 (461-569)||(39602228-39602335)
chr3 (489-629)||(39980701-39980840)
chr3 (500-580)||(40665412-40665492)
chr3 (459-562)||(583988-584091)
chr3 (461-548)||(16073082-16073169)
chr3 (480-531)||(35364255-35364306)
chr3 (459-521)||(24684889-24684951)
chr3 (463-581)||(36631057-36631175)
chr3 (480-578)||(4401010-4401105)
chr3 (462-580)||(402549-402666)
chr3 (487-629)||(21367637-21367778)
chr3 (493-571)||(31106153-31106231)
chr3 (460-529)||(37689176-37689243)
chr3 (467-552)||(33405202-33405287)
[»] chr4 (21 HSPs)
chr4 (461-581)||(55414426-55414546)
chr4 (459-581)||(18425755-18425876)
chr4 (524-629)||(3069932-3070036)
chr4 (460-527)||(22030147-22030213)
chr4 (459-629)||(50681048-50681217)
chr4 (461-602)||(54069402-54069543)
chr4 (461-581)||(41336705-41336824)
chr4 (504-601)||(7839347-7839444)
chr4 (459-552)||(17204080-17204173)
chr4 (463-552)||(17884014-17884103)
chr4 (504-629)||(21731615-21731739)
chr4 (486-581)||(17822871-17822966)
chr4 (459-569)||(29912891-29913000)
chr4 (462-511)||(3155548-3155597)
chr4 (462-519)||(7601704-7601761)
chr4 (486-578)||(2996542-2996634)
chr4 (462-552)||(1203151-1203242)
chr4 (461-552)||(9760384-9760475)
chr4 (459-577)||(16199991-16200109)
chr4 (465-543)||(25885807-25885885)
chr4 (541-631)||(25904180-25904269)
[»] chr1 (29 HSPs)
chr1 (459-629)||(24915010-24915179)
chr1 (480-581)||(473127-473228)
chr1 (504-629)||(49938734-49938858)
chr1 (495-629)||(3233974-3234107)
chr1 (459-581)||(47432038-47432159)
chr1 (463-581)||(14576660-14576777)
chr1 (504-581)||(1510316-1510393)
chr1 (459-581)||(17830096-17830214)
chr1 (458-529)||(13809939-13810010)
chr1 (462-552)||(1432460-1432550)
chr1 (462-580)||(37842362-37842480)
chr1 (462-528)||(38578472-38578538)
chr1 (467-581)||(41184656-41184770)
chr1 (459-552)||(27976537-27976630)
chr1 (504-581)||(42174842-42174919)
chr1 (541-626)||(51929501-51929585)
chr1 (460-512)||(14331732-14331784)
chr1 (469-521)||(15477530-15477582)
chr1 (462-581)||(17603390-17603512)
chr1 (459-515)||(30582020-30582076)
chr1 (459-551)||(41505629-41505720)
chr1 (468-580)||(51695502-51695613)
chr1 (458-521)||(30581743-30581806)
chr1 (560-631)||(42575426-42575496)
chr1 (469-536)||(48064261-48064328)
chr1 (462-580)||(7218081-7218199)
chr1 (533-619)||(37473419-37473504)
chr1 (462-552)||(49888712-49888802)
chr1 (464-521)||(51190808-51190865)
[»] chr2 (28 HSPs)
chr2 (468-629)||(41851486-41851646)
chr2 (459-629)||(41241092-41241260)
chr2 (459-582)||(12464478-12464601)
chr2 (459-581)||(45229454-45229575)
chr2 (461-581)||(32592531-32592650)
chr2 (459-602)||(41812077-41812218)
chr2 (462-552)||(3611171-3611261)
chr2 (462-629)||(2142598-2142765)
chr2 (461-629)||(43279486-43279653)
chr2 (488-580)||(1625871-1625963)
chr2 (541-629)||(26202052-26202139)
chr2 (538-586)||(33981143-33981191)
chr2 (462-569)||(4026762-4026869)
chr2 (459-514)||(42868534-42868589)
chr2 (463-580)||(12289742-12289860)
chr2 (459-521)||(42659217-42659279)
chr2 (459-528)||(2227108-2227177)
chr2 (462-581)||(10490574-10490694)
chr2 (462-498)||(13220395-13220431)
chr2 (463-581)||(12194897-12195016)
chr2 (464-579)||(18066075-18066190)
chr2 (462-557)||(28206212-28206307)
chr2 (462-521)||(42420360-42420419)
chr2 (459-584)||(33319815-33319941)
chr2 (459-520)||(3932292-3932353)
chr2 (462-569)||(7043741-7043847)
chr2 (460-513)||(13325513-13325566)
chr2 (459-551)||(41407243-41407336)
[»] chr7 (22 HSPs)
chr7 (488-628)||(17944303-17944442)
chr7 (486-601)||(33601396-33601510)
chr7 (459-581)||(30570937-30571059)
chr7 (461-629)||(48469988-48470155)
chr7 (461-628)||(420304-420470)
chr7 (541-611)||(11619135-11619204)
chr7 (463-629)||(19022544-19022709)
chr7 (474-631)||(20526403-20526559)
chr7 (465-578)||(39279910-39280023)
chr7 (462-581)||(34743974-34744092)
chr7 (459-529)||(119852-119922)
chr7 (459-581)||(40252113-40252235)
chr7 (541-630)||(21568453-21568541)
chr7 (545-629)||(3927969-3928052)
chr7 (486-581)||(15309572-15309666)
chr7 (459-514)||(46078089-46078144)
chr7 (466-580)||(40688993-40689107)
chr7 (466-519)||(8960695-8960748)
chr7 (462-527)||(28613594-28613659)
chr7 (459-520)||(44216842-44216903)
chr7 (459-521)||(45264035-45264099)
chr7 (463-570)||(48507667-48507776)
[»] chr5 (19 HSPs)
chr5 (480-629)||(16937842-16937990)
chr5 (462-629)||(10639898-10640064)
chr5 (462-580)||(4014431-4014549)
chr5 (462-629)||(12425516-12425684)
chr5 (459-511)||(9107054-9107106)
chr5 (462-580)||(9202755-9202873)
chr5 (463-581)||(25461038-25461155)
chr5 (461-571)||(29925785-29925895)
chr5 (463-513)||(29935423-29935473)
chr5 (459-581)||(35445997-35446119)
chr5 (462-580)||(39105409-39105527)
chr5 (541-601)||(12857324-12857384)
chr5 (460-496)||(39594751-39594787)
chr5 (486-549)||(32372593-32372656)
chr5 (462-580)||(706408-706526)
chr5 (460-529)||(24030459-24030529)
chr5 (468-569)||(32703294-32703393)
chr5 (462-500)||(40590472-40590510)
chr5 (459-512)||(3735566-3735619)
[»] chr8 (15 HSPs)
chr8 (459-629)||(35534572-35534738)
chr8 (460-581)||(12976156-12976276)
chr8 (460-629)||(26771208-26771376)
chr8 (459-586)||(25930555-25930682)
chr8 (467-581)||(29205758-29205871)
chr8 (462-513)||(7646151-7646202)
chr8 (462-577)||(16210896-16211011)
chr8 (459-550)||(42043382-42043473)
chr8 (470-552)||(29168927-29169009)
chr8 (502-581)||(41595964-41596045)
chr8 (460-552)||(29168092-29168179)
chr8 (462-521)||(4558743-4558802)
chr8 (504-579)||(38648338-38648413)
chr8 (465-569)||(9956832-9956934)
chr8 (468-529)||(16733980-16734041)
[»] chr6 (17 HSPs)
chr6 (462-580)||(20368187-20368305)
chr6 (459-567)||(6909892-6910001)
chr6 (462-626)||(2735014-2735177)
chr6 (463-579)||(34430469-34430580)
chr6 (459-546)||(24626237-24626324)
chr6 (460-521)||(4163118-4163179)
chr6 (460-521)||(4224739-4224800)
chr6 (463-530)||(29296350-29296417)
chr6 (462-511)||(430452-430501)
chr6 (504-581)||(6536602-6536679)
chr6 (465-580)||(769087-769201)
chr6 (462-529)||(6200504-6200571)
chr6 (459-514)||(8147644-8147699)
chr6 (462-569)||(9093574-9093681)
chr6 (462-581)||(14926796-14926915)
chr6 (523-601)||(9763566-9763644)
chr6 (463-552)||(1402942-1403031)
[»] scaffold0050 (1 HSPs)
scaffold0050 (523-581)||(58748-58806)
[»] scaffold0012 (1 HSPs)
scaffold0012 (541-582)||(207582-207623)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 458 - 794
Target Start/End: Original strand, 25348786 - 25349115
Alignment:
Q  458 atacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaa 557  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25348786 atacataagctatttctata----aaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacgaaa 25348881  T
Q  558 ttaagttgaaaa-aagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaattgatagatgaacttaaataaatcaat 656  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  25348882 ttaagttgaaaaaaagcttatgaaatgtgttacaacttgttttcaataaattctttcaaacaatttcacaaaatttatagatgaacttaaataaatcaat 25348981  T
Q  657 ctaacttgactcaatgtagtaaataagtgatcgctaatattaaattttaaacaaaatgttgtcaattgattaagtaccaagatttccgccacattcttct 756  Q
    ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |    
T  25348982 ctaaactgactcaatgtggtaaataagtgatcgctaatattaaattttaaacaaaattttgtcaattgattaagtaccaagagttccgccacattcttat 25349081  T
Q  757 ccatgaaatctaagctgcttaatagttataaataatgt 794  Q
     ||||||||||    ||||||||||||||||| |||||    
T  25349082 tcatgaaatct----tgcttaatagttataaacaatgt 25349115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 25348384 - 25348802
Alignment:
Q  13 tggacatcattcggagtgtgagattggtcttctaaattaatcgatcattgagctaaataactagttaaaaaataacatacacatacatatggtctatgct 112  Q
    ||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  25348384 tggacatcactcgaagtgtgagattgatcttctaaattaatcggtcattgagctaaataactaattaaaaaataacatacacatacatacggtctatact 25348483  T
Q  113 tatttttcacggcttattttagggggttggtagctcaactgatttgagagatggnnnnnnnnttgaaagttctatgttcaaatttggacgaaatggt-nn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||        |||||||||||||||||||||||  ||||||||||       
T  25348484 tatttttcacggcttattttagggggttggtagctcaactgatttgagctaagg--aaaaaattgaaagttctatgttcaaatttaaacgaaatggtaaa 25348581  T
Q  212 nnnnnntataacaactaattactaatacttgccggtggcatttagattcctttgatgacactttgctattaaagnnnnnnngacccgaagggttaggttc 311  Q
          | ||||||||||||||||| | || || |||||||||||||||||||| || ||||||||||||||||       |||||     |||||||||    
T  25348582 aaaaaatgtaacaactaattactaacatttaccagtggcatttagattcctttggtggcactttgctattaaagaaaaagagaccc-----gttaggttc 25348676  T
Q  312 ctttggtgtgcctaannnnnnncatttgaaagcttttaacagcacggagtaatgttaccaacattgttggcataaacatcttatcttttatgatgataag 411  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25348677 ctttggtgtgcctaatttttttcatttgaaagcttttaacagcacggagtaatgttaccaacattgttggcataaacatcttatcttttatgatgataag 25348776  T
Q  412 tgtctgtgtatacataagctatttct 437  Q
    ||||||||||||||||||||||||||    
T  25348777 tgtctgtgtatacataagctatttct 25348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 459 - 552
Target Start/End: Complemental strand, 30956754 - 30956661
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||| | ||||| |||||||||||||  |||||||||||||||    
T  30956754 tacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaactta 30956661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 459 - 552
Target Start/End: Complemental strand, 30972566 - 30972473
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||| | ||||| |||||||||||||  |||||||||||||||    
T  30972566 tacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaactta 30972473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 459 - 616
Target Start/End: Complemental strand, 53789589 - 53789433
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||||||||| ||||| | || |||| ||| | | |||| ||||||| ||||| ||||| ||| |||  ||| |||||||||||  ||||    
T  53789589 tacataagctatttctataggaaaagatgaactaaaattaaaatgttttggtatatgctataagttgttatcataagctatcatggagaacttatgaaat 53789490  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaa 616  Q
    |||| |||||||||||||||||| |||| | ||| ||||| ||| || ||||||||||    
T  53789489 taagctgaaaaaagcttatgaaaagtgtcataagctgtttccaa-aagttctctcaaa 53789433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 578
Target Start/End: Original strand, 901887 - 901985
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatg 578  Q
    ||||| ||||||||  ||||||||||||| ||||||||||| |||||||| | |||  || ||||||||||||  ||| ||||||||||||||||||||    
T  901887 aaaagataaaataacattatattatttttatatatgttatactttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatg 901985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 460 - 528
Target Start/End: Complemental strand, 35959583 - 35959515
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttt 528  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| | ||| ||||||    
T  35959583 acataagctatttctatagaaaaggataaaataaagttaaattatttttgtatatgctgtaagttgttt 35959515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 581
Target Start/End: Original strand, 20170486 - 20170587
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatga 579  Q
    ||||| |||||||| |||| ||| |||||||||||| ||||| ||||||| | |||| || || ||||||| |  ||| |||||||||||||||||||||    
T  20170486 aaaagataaaataatgttaaattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaataagttgaaaaaagcttatga 20170585  T
Q  580 aa 581  Q
    ||    
T  20170586 aa 20170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 3845690 - 3845572
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||||||||||||||||||| |||| |||||| |||||  | | ||||| |||||| || |   |||||||| |||| |||||||||||||||  |||     
T  3845690 tacataagctatttctatagagaaagataaaattaagttgaaatgtttttctatatgctacatgctgttttcataagttatcttggagaacttatgaaaa 3845591  T
Q  559 taagttgaaaaaagcttat 577  Q
    |||| ||||||||| ||||    
T  3845590 taagctgaaaaaagattat 3845572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 20880419 - 20880540
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||||| ||| | ||||| || |||| ||| |||||||||||| |||||  |||||| |||||  || ||||||||||||  |||     
T  20880419 tacataagctatttttatagcaaatgataaaacaa-gttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaa 20880517  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||| | ||||||||||||||||    
T  20880518 taagctcaaaaaagcttatgaaa 20880540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 462 - 579
Target Start/End: Complemental strand, 44061148 - 44061032
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||||| |||||||| |||| ||| ||||| |||| | ||||| ||||||||| | |  ||||| |||||||||  |||||||    
T  44061148 ataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaattaa 44061049  T
Q  562 gttgaaaaaagcttatga 579  Q
    | | |||| |||||||||    
T  44061048 gct-aaaacagcttatga 44061032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 586
Target Start/End: Complemental strand, 18405960 - 18405832
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattattttt-gtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaa 557  Q
    |||||||| ||||| ||||| ||||| |||||||  |||  ||| ||||| ||||||| ||||| ||||||||| |||  |||||||||||||||  |||    
T  18405960 tacataagttatttatataggaaaagataaaatatcgttgaatttttttttgtatatgctataagttgttttcataagctatcttggagaacttatgaaa 18405861  T
Q  558 ttaagttgaaaaaagcttatgaaatgtgt 586  Q
    ||||| |  |||||| |||||||| ||||    
T  18405860 ttaagcttgaaaaagattatgaaaagtgt 18405832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 569
Target Start/End: Complemental strand, 39602335 - 39602228
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||||||||||||||||| ||| ||||||||| |||  ||  ||||| |||||||  |||||||| |||  ||||| |||||||||  ||| ||    
T  39602335 cataagctatttctatagaaaaagataacataaagttaaatt-gttgcgtataagttataagctgttttcataagctatctttgagaacttatgaaaata 39602237  T
Q  561 agttgaaaa 569  Q
    |||||||||    
T  39602236 agttgaaaa 39602228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 629
Target Start/End: Original strand, 39980701 - 39980840
Alignment:
Q  489 aataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgtta 588  Q
    ||||| |||| ||| |||||| | ||| ||||| ||||||| | |||  || ||||||||||||  ||| |||||||||||||||||||||||   || |    
T  39980701 aataacgttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtca 39980800  T
Q  589 caagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
     ||| ||||||| |||| |||||| ||||| ||||||||||    
T  39980801 taagctgttttc-ataagttctcttaaacagtctcacaaaa 39980840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 580
Target Start/End: Original strand, 40665412 - 40665492
Alignment:
Q  500 attatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaa 580  Q
    ||||||||||| || |||||||  |||||||| |||| |||||||||| |||| |||| |||| |||||| ||||||||||    
T  40665412 attatttttgtgtaagttataagatgttttcataagttatcttggagagcttataaaaataagctgaaaacagcttatgaa 40665492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 459 - 562
Target Start/End: Original strand, 583988 - 584091
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| |||||||  ||| ||||| ||  ||||| |||  |||||| ||||||||  ||||    
T  583988 tacataagttatttctatagaaaatgataaaataaagttaaattgtttttgttcatgctataagttagtttcataagctatcttgaagaacttatgaaat 584087  T
Q  559 taag 562  Q
    ||||    
T  584088 taag 584091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 461 - 548
Target Start/End: Complemental strand, 16073169 - 16073082
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaa 548  Q
    |||||||||||||||||| ||||| |||||| || ||| ||  ||||||||||||||||||  ||| |||| |||| |||||| ||||    
T  16073169 cataagctatttctatagcaaaagttaaaattaatttaaatagtttttgtatatgttataagctgtcttcataagttatcttgaagaa 16073082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 35364255 - 35364306
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttca 531  Q
    ||||||||||||||||||| ||||||||| |||| ||||||| |||||||||    
T  35364255 aaaaggtaaaataaagttaaattatttttatataagttataagttgttttca 35364306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 24684951 - 24684889
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    |||||||||||||| ||||||||||| ||||||||| ||  ||| |||||||||||| |||||    
T  24684951 tacataagctatttttatagaaaaagataaaataaattttaattgtttttgtatatgctataa 24684889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 581
Target Start/End: Complemental strand, 36631175 - 36631057
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaag 562  Q
    |||||||||||||||| ||| | |||| |||||||| ||| |||||||| ||| ||||| ||||||| |  ||  || ||||||||||||  ||| ||||    
T  36631175 taagctatttctatagtaaaggataaagtaaagttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataag 36631076  T
Q  563 ttgaaaaaagcttatgaaa 581  Q
      ||||||||||| |||||    
T  36631075 cagaaaaaagcttttgaaa 36631057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 578
Target Start/End: Original strand, 4401010 - 4401105
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatg 578  Q
    ||||||| |||||| |||| |||||||| ||||||| ||||| |||||||   |||| || ||||||||||||  ||| |||||| |||| ||||||||    
T  4401010 aaaaggtgaaataacgttaaattattttcgtatatgctataagttgtttt---aagttatattggagaacttatgaaaataagttaaaaacagcttatg 4401105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 402666 - 402549
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||||||||| | || |||| ||| ||| |||| ||||| |||||||  |||||| | ||   |||||| |||||||   |||||||    
T  402666 ataagctatttctatagaaaaagat-aattaaatttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaa 402568  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | |||||| ||||||||||    
T  402567 gctgaaaacagcttatgaa 402549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 487 - 629
Target Start/End: Original strand, 21367637 - 21367778
Alignment:
Q  487 aaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgt 586  Q
    |||||||||||| ||| |||| |||||   ||||| ||||||||| |||  |||||||||||||||  ||| |||| |||||| ||||| ||||   |||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgt 21367736  T
Q  587 tacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
     | ||| ||||||| |||| ||||| |||||| || |||||||    
T  21367737 cataagctgttttc-ataagttctcccaaacagtcccacaaaa 21367778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 493 - 571
Target Start/End: Original strand, 31106153 - 31106231
Alignment:
Q  493 aagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaa 571  Q
    |||||| |||||||||||||||||||||| || |||||  || | |||||||||| |||  |||| |||| ||||||||    
T  31106153 aagttaaattatttttgtatatgttataagttattttcgtaatttatcttggagatcttttaaaaataagctgaaaaaa 31106231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 37689176 - 37689243
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtttt 529  Q
    ||||||||||||||||||| ||||| ||||||||||  | ||| |||||||||||| ||||  |||||||    
T  37689176 acataagctatttctatagcaaaagataaaataaag--aaattgtttttgtatatgctataggttgtttt 37689243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 552
Target Start/End: Complemental strand, 33405287 - 33405202
Alignment:
Q  467 ctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||| |||||||||||||||||||  || ||||  |||| | |||||  |||||||| |||  |||||| ||||||||    
T  33405287 ctatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagctatcttgaagaactta 33405202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 461 - 581
Target Start/End: Complemental strand, 55414546 - 55414426
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||||||||| | ||||| |||||||||||||  || |||||| ||||| ||||| ||||||||| |||| |||||||||||||||  ||| ||    
T  55414546 cataagctatttctattggaaaagataaaataaagttaatttttttttgcatatgctataaattgttttcataagttatcttggagaacttatgaaaata 55414447  T
Q  561 agttgaaaaaagcttatgaaa 581  Q
    |||||||||||||||||||||    
T  55414446 agttgaaaaaagcttatgaaa 55414426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 18425755 - 18425876
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||| |||||||| ||| | ||| ||||||||||||||| ||| |||||||| |||||||||  ||||||||||||  |||||||||||| || ||||     
T  18425755 tacatgagctattt-tatggcaaatggtaaaataaagttaaattgtttttgtacatgttataaaatgttttcaaaagccatcttggagaacatataaaaa 18425853  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    ||||||| |||||||||||||||    
T  18425854 taagttggaaaaagcttatgaaa 18425876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 524 - 629
Target Start/End: Complemental strand, 3070036 - 3069932
Alignment:
Q  524 tgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctc 623  Q
    |||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||  ||| | ||| ||||||||| || ||| | |||||| ||||    
T  3070036 tgttttcataagttatcttggaaaa-ttacaaaattaagttgaaaaaagcttatgaaaaatgtcataagatgttttcaaaaagttcacccaaacagtctc 3069938  T
Q  624 acaaaa 629  Q
    ||||||    
T  3069937 acaaaa 3069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 22030147 - 22030213
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtt 527  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||| |||||    
T  22030147 acataagctatttctatagaaag-gataaaataaagttatattatttttgtatatgctataagttgtt 22030213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 629
Target Start/End: Complemental strand, 50681217 - 50681048
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||| ||||||||| ||||| | ||| |||||||| |||| ||| |||||||||||| ||||| ||||||  | |||  || |||||||| |||  |||     
T  50681217 tacaaaagctatttttataggataagataaaataatgttaaattgtttttgtatatgctataagttgtttatataagctatattggagaaattatgaaaa 50681118  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||| |||||||||||||||||||  ||| |  |  ||||||| |||| |||||||||||| ||||||||||    
T  50681117 taaattgaaaaaagcttatgaaaattgtcattaactgttttc-ataagttctctcaaacagtctcacaaaa 50681048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 602
Target Start/End: Complemental strand, 54069543 - 54069402
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||| ||||||| ||||  ||||| |||||||| |||| ||| |||||||||||| ||||||||||||| | |||| || ||| ||||| ||  ||| ||    
T  54069543 catatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatgctataatttgtttttataagttatattgaagaacatatgaaaata 54069444  T
Q  561 agttgaaaaaagcttatgaaatgtgttacaagttgttttcaa 602  Q
    |||| |||| |||||||||||  ||||  ||| |||||||||    
T  54069443 agttaaaaacagcttatgaaaattgttgtaagctgttttcaa 54069402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 461 - 581
Target Start/End: Original strand, 41336705 - 41336824
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||||| ||||| ||| | ||||||||||||| ||| |||||||||||||||||| |||||||   |||  |   || |||| |||| ||| ||    
T  41336705 cataagctatttttatagcaaa-gataaaataaagttaaattgtttttgtatatgttataaattgtttttctaagctagggtgaagaatttacgaaaata 41336803  T
Q  561 agttgaaaaaagcttatgaaa 581  Q
    |||||||||||||||||||||    
T  41336804 agttgaaaaaagcttatgaaa 41336824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 601
Target Start/End: Complemental strand, 7839444 - 7839347
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttca 601  Q
    |||||||||||| ||||| ||||||| | |||  |  ||| ||||||||| ||| |||||||||||||||||||||||  ||| | ||||||||||||    
T  7839444 tttttgtatatgctataaattgtttttataagctagattgaagaacttacgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttttca 7839347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 17204080 - 17204173
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||| ||| ||||| ||| | ||||||||||||||||| |||||||||||| || || ||  |||||  ||| |||||||||||||||    
T  17204080 tacataagctgtttttatagcaaatgttaaaataaagttatattgtttttgtatatgctacaagttagtttcattagttatcttggagaactta 17204173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 463 - 552
Target Start/End: Original strand, 17884014 - 17884103
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||||||  ||||| ||||||||||||| ||| |||||||||| ||||| | ||||||||| |||  || ||||||| ||||    
T  17884014 taagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagctta 17884103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 629
Target Start/End: Complemental strand, 21731739 - 21731615
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaat 603  Q
    ||||||||| || ||||| ||||||| | |||  || |||||||| |||  ||| |||||||||||||| ||||||||  ||| | ||| ||||||| ||    
T  21731739 tttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataagctgttttc-at 21731641  T
Q  604 aaattctctcaaacaatctcacaaaa 629  Q
    || ||||| |||||||||||||||||    
T  21731640 aagttctcccaaacaatctcacaaaa 21731615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 486 - 581
Target Start/End: Complemental strand, 17822966 - 17822871
Alignment:
Q  486 taaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    |||||| |||||| ||| || || |||||| ||||| ||||||||| |||  |||||||||||||||  ||| |||| | ||||||||||||||||    
T  17822966 taaaattaagttaaattgttattttatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaa 17822871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 29912891 - 29913000
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||| |||||||||||||| ||||  ||||||||||| | ||| |||| |||||||||| || | ||||||| |||  |||||||| |||||| ||||     
T  29912891 tacatcagctatttctatagcaaaaaataaaataaagtaaaattgtttt-gtatatgttaaaagtcgttttcataagctatcttggacaacttataaaaa 29912989  T
Q  559 taagttgaaaa 569  Q
    |||| ||||||    
T  29912990 taagctgaaaa 29913000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 3155548 - 3155597
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgta 511  Q
    ||||||||||||||||| ||||| ||||||||||||| ||| ||||||||    
T  3155548 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgta 3155597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 519
Target Start/End: Original strand, 7601704 - 7601761
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttat 519  Q
    |||||||||| |||||| ||| | ||||||||||||| ||| ||||||||||||||||    
T  7601704 ataagctattcctatagcaaaggataaaataaagttaaattgtttttgtatatgttat 7601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 578
Target Start/End: Original strand, 2996542 - 2996634
Alignment:
Q  486 taaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatg 578  Q
    ||||||| ||| | ||| ||||| |||| ||||||| ||||||||| |||  |||||||||| | ||  ||| ||||||||||||||||||||    
T  2996542 taaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatg 2996634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 1203242 - 1203151
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttt-tgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||||||||||||||| ||||  ||||||||||| || || ||||  ||||| | ||||| |||| |||| |||| |||||||||||||||    
T  1203242 ataagctatttctatagcaaaacataaaataaagtaatttttttttccgtataagctataagttgtcttcataagttatcttggagaactta 1203151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 9760384 - 9760475
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||| ||||| ||| ||||||| ||||||||||||| ||| |||||  ||||| ||||| ||||||| | |||  || ||||||||||||    
T  9760384 cataagttatttttattgaaaaagataaaataaagttaaattcttttttaatatgctataagttgtttttataagctatattggagaactta 9760475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 16200109 - 16199991
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||||||| | ||||||| ||| | | | | |||||||||||| |||||  |||||||| |||  ||||||||| |||||  |||     
T  16200109 tacataagctatttttatagaagatggtaaaagaaaatcaaactgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaa 16200010  T
Q  559 taagttgaaaaaagcttat 577  Q
    |||| | ||||| ||||||    
T  16200009 taagctaaaaaaggcttat 16199991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 465 - 543
Target Start/End: Original strand, 25885807 - 25885885
Alignment:
Q  465 agctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttg 543  Q
    |||| ||||||||| ||||| ||||||||||||| ||| |||| || || | ||||| ||||||||| |||| ||||||    
T  25885807 agctctttctatagcaaaagataaaataaagttaaattgttttcgtgtaagctataagttgttttcataagttatcttg 25885885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 631
Target Start/End: Complemental strand, 25904269 - 25904180
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaatt 631  Q
    |||||||||||| |||| |||| ||||||||||||||||||  ||  | ||| ||||||| ||||  |||| |||||| ||||||||||||    
T  25904269 ttggagaacttataaaaataagctgaaaaaagcttatgaaaaatggcataagctgttttc-ataagctctcccaaacagtctcacaaaatt 25904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 459 - 629
Target Start/End: Complemental strand, 24915179 - 24915010
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||||| |||||||||||| | ||| ||||||||||||| ||| |||||||||||| |||||  |||||||| |||   |||||||||||||   |||     
T  24915179 tacataaactatttctatagcagaagataaaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaa 24915080  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    |||||||||||||||||||||||  ||| | ||||||||||| ||||||| || ||||||  |||||||||    
T  24915079 taagttgaaaaaagcttatgaaaaatgtcataagttgttttc-ataaattgtcccaaacagcctcacaaaa 24915010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 480 - 581
Target Start/End: Original strand, 473127 - 473228
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatga 579  Q
    ||||||||||||||||||| ||| |||| || |||| ||||| ||||||| | ||||  | ||||||||||||  ||| |||||||||||||||||||||    
T  473127 aaaaggtaaaataaagttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagttgaaaaaagcttatga 473226  T
Q  580 aa 581  Q
    ||    
T  473227 aa 473228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 504 - 629
Target Start/End: Original strand, 49938734 - 49938858
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaat 603  Q
    |||||||||||||||||| ||||||| | |||  || || |||||||||  ||| ||||||||||||||||| |||||  ||| | ||| ||||||| ||    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttc-at 49938832  T
Q  604 aaattctctcaaacaatctcacaaaa 629  Q
    || ||||| |||||||||||||||||    
T  49938833 aagttctcccaaacaatctcacaaaa 49938858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 629
Target Start/End: Complemental strand, 3234107 - 3233974
Alignment:
Q  495 gttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagtt 594  Q
    |||| ||| |||||||||||| ||||| ||||||| | |||  || ||||||||||||  ||| ||||| ||||||| |||||||||  ||||| |||||    
T  3234107 gttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagtt 3234008  T
Q  595 gttttcaataaattctctcaaacaatctcacaaaa 629  Q
    |||||| |||| ||||| | |||| ||||||||||    
T  3234007 gttttc-ataagttctccctaacagtctcacaaaa 3233974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 47432038 - 47432159
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||| |||||| ||||| |||||  |||||| | |||| || ||| |||| |||  |||     
T  47432038 tacataagctatttttatagaaaaagataaaataaagttaaattgtttttgaatatgctataaggtgtttt-ataagttatattgaagaatttatgaaaa 47432136  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||| |||||||||||| |||||    
T  47432137 taagctgaaaaaagcttgtgaaa 47432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 581
Target Start/End: Complemental strand, 14576777 - 14576660
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaag 562  Q
    ||||||||||| |||| ||| | ||||||||||||| ||| |||||||||||| |||||||| |||| | |||  || || ||||||||  |||| ||||    
T  14576777 taagctatttccatagtaaaggataaaataaagttaaattgtttttgtatatgctataatttttttttataagctatattagagaactttgaaaa-taag 14576679  T
Q  563 ttgaaaaaagcttatgaaa 581  Q
     |||||||||||| |||||    
T  14576678 ctgaaaaaagcttttgaaa 14576660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 581
Target Start/End: Complemental strand, 1510393 - 1510316
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    |||||||||| ||||||| ||||||| | |||   | ||||||||||||| ||| |||||||||||||||||||||||    
T  1510393 tttttgtataggttataagttgtttttataagctctattggagaacttacgaaaataagttgaaaaaagcttatgaaa 1510316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 17830096 - 17830214
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||||| ||| | ||||||||||||| | |||||||||||||| || || || |||||| | | ||||||   ||||||   |||     
T  17830096 tacataagctatttttatagcaaatgataaaataaagtta-actatttttgtatatgctacaagttattttcatatgcaatctt---gaacttttgaaaa 17830191  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||||||||||||||||||||||    
T  17830192 taagttgaaaaaagcttatgaaa 17830214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 458 - 529
Target Start/End: Original strand, 13809939 - 13810010
Alignment:
Q  458 atacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtttt 529  Q
    ||||||||| ||||||| ||| ||||| ||||||||||||| ||| |||||||||||| ||||  |||||||    
T  13809939 atacataagttatttctttagcaaaagataaaataaagttaaattgtttttgtatatgctatatattgtttt 13810010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 1432460 - 1432550
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||||||||||||||| ||||| ||||||| ||||  ||| ||||| |||| | ||||| ||||||||| ||   |||||||||||||||    
T  1432460 ataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctataaattgttttcataaactatcttggagaactta 1432550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 37842480 - 37842362
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||||| | ||||||||||| | | | || | ||| | ||||| ||||||||| |||  |||||| |||||||| |||| |||    
T  37842480 ataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataagttgttttcataagctatcttgaagaacttataaaaataa 37842381  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | ||||||  |||||||||    
T  37842380 gctgaaaactgcttatgaa 37842362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 38578472 - 38578538
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttt 528  Q
    ||||||||||||||||  ||||| ||| ||||||||| |||||||||||||| | ||||| ||||||    
T  38578472 ataagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 581
Target Start/End: Complemental strand, 41184770 - 41184656
Alignment:
Q  467 ctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttga 566  Q
    |||||| ||||| ||||| |||||||| |||| ||| ||||||||||| |||||||||| ||| | |    || ||||| ||||||  ||| ||||||||    
T  41184770 ctatttttatagcaaaagataaaataatgttaaattgtttttgtatatattataatttggttttatataccatattggaaaacttatgaaaataagttga 41184671  T
Q  567 aaaaagcttatgaaa 581  Q
    ||||| |||||||||    
T  41184670 aaaaaacttatgaaa 41184656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 27976537 - 27976630
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||||| ||||| ||| | |  || ||||||| ||| |||||||||||| ||||| ||||||||| |||  ||||| |||||||||    
T  27976537 tacataagctatttttatagcaaatgattgaacaaagttaaattgtttttgtatatgctataagttgttttcataagctatcttcgagaactta 27976630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 581
Target Start/End: Original strand, 42174842 - 42174919
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    |||||||||||| ||||| ||||||| | |||| || ||||||||||||  ||| |||||| |||| |||||||||||    
T  42174842 tttttgtatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatgaaa 42174919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 626
Target Start/End: Complemental strand, 51929585 - 51929501
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcaca 626  Q
    ||||||||||||   || |||||||||||||||||||||||  ||| | ||| ||||||| || ||||||| ||||||||||||||    
T  51929585 ttggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcataagctgttttc-atgaattctcccaaacaatctcaca 51929501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 14331732 - 14331784
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtat 512  Q
    |||||||||||||||| |||| ||| ||||||||||||| ||| |||||||||    
T  14331732 acataagctatttctacagaacaagataaaataaagttaaattgtttttgtat 14331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 15477530 - 15477582
Alignment:
Q  469 atttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    |||||||||| ||||| ||||||||||||| ||| |||||||||||| |||||    
T  15477530 atttctatagtaaaagataaaataaagttaaattgtttttgtatatgctataa 15477582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 581
Target Start/End: Complemental strand, 17603512 - 17603390
Alignment:
Q  462 ataagctatttctatagaaaaaggt---aaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||||||||| | ||||||||| |   ||||||| |||| ||| |||||||||||| ||||| ||||||| | |||  || |||||||||||   |||     
T  17603512 ataagctatttttgtagaaaaagattaaaaaataacgttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaa 17603413  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    ||||||| |||||| ||||||||    
T  17603412 taagttgtaaaaagtttatgaaa 17603390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 30582076 - 30582020
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatg 515  Q
    |||||||| ||||| ||||||||||| |||||||||||||  || ||||||||||||    
T  30582076 tacataaggtatttttatagaaaaagataaaataaagttaacttgtttttgtatatg 30582020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 551
Target Start/End: Original strand, 41505629 - 41505720
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactt 551  Q
    |||||||||||||| ||||||||| | |||| |||||||| ||| |||| |||||||||||||  |||||| | |||  || |||||||||||    
T  41505629 tacataagctatttttatagaaaacg-taaattaaagttaaattgttttcgtatatgttataagctgtttttataagctatattggagaactt 41505720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 580
Target Start/End: Complemental strand, 51695613 - 51695502
Alignment:
Q  468 tatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaa 567  Q
    ||||||||||| ||||| ||||||||||| | ||| |||| ||||| ||||| |  |||||||| |||  ||||||||||| |||  ||| |||| ||||    
T  51695613 tatttctatagtaaaagataaaataaagtaa-attgttttcgtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaa 51695515  T
Q  568 aaaagcttatgaa 580  Q
    || ||||||||||    
T  51695514 aatagcttatgaa 51695502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 30581743 - 30581806
Alignment:
Q  458 atacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||||||||| ||||||||| | | ||||||||||| ||| ||||| |||||| |||||    
T  30581743 atacataagctatttttatagaaaacgatgaaataaagttaaattgtttttttatatgctataa 30581806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 631
Target Start/End: Complemental strand, 42575496 - 42575426
Alignment:
Q  560 aagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaatt 631  Q
    ||||||||||||||||||||||  ||| | ||||||||||  ||||||| |||||||||  |||||||||||    
T  42575496 aagttgaaaaaagcttatgaaaactgtcataagttgtttt-tataaattttctcaaacagcctcacaaaatt 42575426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 536
Target Start/End: Original strand, 48064261 - 48064328
Alignment:
Q  469 atttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagt 536  Q
    |||||||||| ||||| ||||||||||| | | |||||||||||| ||||||| ||| ||||| ||||    
T  48064261 atttctatagcaaaagataaaataaagtaaaactatttttgtataagttataagttgatttcataagt 48064328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 7218199 - 7218081
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||| ||||||| |||  ||||||||||||||||| | ||| ||||  |||| | ||||| ||||||||| ||   ||| |||||||||||  ||| |||    
T  7218199 ataatctatttccataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataa 7218100  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    |||||||| ||||| ||||    
T  7218099 gttgaaaacagcttgtgaa 7218081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 37473419 - 37473504
Alignment:
Q  533 aagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaa 619  Q
    |||| |||||||||||||||  ||| |||| || |||||||||||||||  ||| | ||||||||||||| || ||||| |||||||    
T  37473419 aagttatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttcaa-aagttctcccaaacaa 37473504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 49888712 - 49888802
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||||||||||| | ||||||| ||||||||||||  ||| |||| ||||| | ||| | ||||||||| |||  ||||| |||||||||    
T  49888712 ataagctatttctttggaaaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaactta 49888802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 521
Target Start/End: Original strand, 51190808 - 51190865
Alignment:
Q  464 aagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||| || || ||||| ||||||||||||| ||| |||||||||| |||||||    
T  51190808 aagctatttgtaaagcaaaagataaaataaagttaaattgtttttgtataagttataa 51190865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 468 - 629
Target Start/End: Original strand, 41851486 - 41851646
Alignment:
Q  468 tatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaa 567  Q
    ||||| ||||| ||||| || |||||||||| ||| |||||||||||| ||||| ||||||||| |||  ||||||||||| |||  |||||||| |||     
T  41851486 tatttatataggaaaagatacaataaagttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaatttatgaaattaagctgag 41851585  T
Q  568 aaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    |||||||||||||| |||| | |||||| |||| |||||||||| ||| || ||||||||||    
T  41851586 aaaagcttatgaaaagtgtcataagttg-tttccataaattctcccaatcagtctcacaaaa 41851646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 459 - 629
Target Start/End: Complemental strand, 41241260 - 41241092
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||||||||| ||||| |||||| |||||| ||| |||||||||||| ||||| | ||||||  |||| |||||||| |||||   ||||    
T  41241260 tacataagctatttctataggaaaagataaaatgaagttaaattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttgtgaaat 41241161  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    |||| ||||||||||||||| || | |||| || |||||||| | || ||||  |||||||||||||||||    
T  41241160 taagctgaaaaaagcttatggaaag-gttataatttgttttc-acaagttctaccaaacaatctcacaaaa 41241092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 459 - 582
Target Start/End: Complemental strand, 12464601 - 12464478
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||| |||||  | |||||| |||  ||||||||||||||   |||     
T  12464601 tacataagctatttctgtagaaaaagataaaataaagttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaa 12464502  T
Q  559 taagttgaaaaaagcttatgaaat 582  Q
    |||| |||||||||||| ||||||    
T  12464501 taagctgaaaaaagcttgtgaaat 12464478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 45229454 - 45229575
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||||||||| ||| | |||||| | |||| ||| |||||||||||||||| | ||||||||| |||  ||||| |||||||||  |||     
T  45229454 tacataagctatttctatagcaaacgataaaatgaggttaaattgtttttgtatatgttatca-ttgttttcataagctatcttcgagaacttatgaaaa 45229552  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||| ||||||||||| ||||||    
T  45229553 taagctgaaaaaagctaatgaaa 45229575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 461 - 581
Target Start/End: Original strand, 32592531 - 32592650
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    ||||| |||||| ||||||||||| |||||||| |||| ||| |||| ||||| | ||||| ||||||| | ||| ||| ||||||||||||  ||| ||    
T  32592531 cataaactatttttatagaaaaagataaaataatgttaaattgtttt-gtatacgctataagttgtttttataagcaatattggagaacttatgaaaata 32592629  T
Q  561 agttgaaaaaagcttatgaaa 581  Q
    |||||| ||||||||||||||    
T  32592630 agttgagaaaagcttatgaaa 32592650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 602
Target Start/End: Complemental strand, 41812218 - 41812077
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||| | ||| |||||||| |||||| ||| |||||||||||| || ||  || |||||||||  |||||||| ||||||  |||     
T  41812218 tacataagctatttttatggcaaatggtaaaatgaagttaaattgtttttgtatatgctacaagatg-tttcaaaagctatcttggaaaacttaggaaa- 41812121  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaa 602  Q
    |||||||||||||||||||||||  ||| | ||| |||||||||    
T  41812120 taagttgaaaaaagcttatgaaaaatgtcataagctgttttcaa 41812077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 3611171 - 3611261
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||  |||||   |||||||| |||  |||||||||||||||    
T  3611171 ataagttatttctatagcaaaaggtaaaataaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaactta 3611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 462 - 629
Target Start/End: Original strand, 2142598 - 2142765
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatctt-ggagaacttacaaaatta 560  Q
    |||||||||| |||||| || ||||||||||||| || |||||||||||||| | ||||| ||||||||| || | ||||| |||||| |||  ||| ||    
T  2142598 ataagctattactatagcaataggtaaaataaagctagattatttttgtataagctataagttgttttcataatttatcttgggagaatttatgaaaata 2142697  T
Q  561 agttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    || | |||| |||| |||||   ||| |||| |||||||| |||| ||||| |||||| ||||| ||||    
T  2142698 agctaaaaacagctaatgaacattgtcacaacttgttttc-ataagttctcccaaacagtctcataaaa 2142765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 461 - 629
Target Start/End: Complemental strand, 43279653 - 43279486
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||||| ||||  ||||| |||||||| || | ||| |||||||||  | ||||| ||||||| | |||  || |||||||||||   ||| ||    
T  43279653 cataagctatttttatatcaaaagataaaataatgtgaaattgtttttgtat--gctataagttgtttttataagctatattggagaacttgtgaaaata 43279556  T
Q  561 agttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctct--caaacaatctcacaaaa 629  Q
    |||||||||||||||||||||  ||| | ||| ||||||| |||||||||||  |||||| ||||||||||    
T  43279555 agttgaaaaaagcttatgaaaattgtcataagctgttttc-ataaattctctcccaaacagtctcacaaaa 43279486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 1625871 - 1625963
Alignment:
Q  488 aaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaa 580  Q
    ||||||||||| ||| |||| ||||| ||||||| ||||||||| |||  |||||||||||||||| ||| | || |||||| | ||||||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaa 1625963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 629
Target Start/End: Original strand, 26202052 - 26202139
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||||||||||||  ||| |||||||||||||||||||||||  ||| | |||||||| || |||||||||  |||| ||||||||||||    
T  26202052 ttggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctc-ataaattctagcaaagaatctcacaaaa 26202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 586
Target Start/End: Original strand, 33981143 - 33981191
Alignment:
Q  538 atcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgt 586  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  33981143 atcttggagaatttatgaaattaagttgaaaaaagcttatgaaatgtgt 33981191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 462 - 569
Target Start/End: Original strand, 4026762 - 4026869
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||||| |||  ||||||  |||||||| || | ||| || ||||||||  ||| |||    
T  4026762 ataagctatttttatagcaaaagataaaataaagttaaattatttttgcataaattataagctgttttcataaattatcctgaagaacttatgaaaataa 4026861  T
Q  562 gttgaaaa 569  Q
    | ||||||    
T  4026862 gctgaaaa 4026869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 42868589 - 42868534
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatat 514  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||| |||||||||||    
T  42868589 tacataagctattttcatagaaaaagataaaataaagttaaattgtttttgtatat 42868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 580
Target Start/End: Original strand, 12289742 - 12289860
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttg-tatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||| |||||| || ||||| |||||| |  ||| ||| |||||| || ||||||||| ||||||| | || | || ||||||||||||  ||| |||    
T  12289742 taagctgtttctacaggaaaagataaaatgacattaaattgtttttggtacatgttataagttgtttttataatttatattggagaacttatgaaaataa 12289841  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    |||||||||||||||||||    
T  12289842 gttgaaaaaagcttatgaa 12289860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 42659279 - 42659217
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    |||||||||||||| ||| ||||| ||||||||||||| | ||| |||||||||||| |||||    
T  42659279 tacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatgctataa 42659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 2227108 - 2227177
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttt 528  Q
    |||||||||||||||||| | ||||| ||||||||| | | ||| ||||||| |||||||||| ||||||    
T  2227108 tacataagctatttctatggtaaaagataaaataaaataaaattgtttttgtgtatgttataagttgttt 2227177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 581
Target Start/End: Original strand, 10490574 - 10490694
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||| ||||  |||| ||| |||||||||| |||| ||| ||| |||||||| |||||  |||||||| |||| ||||| || || |||  ||| |||    
T  10490574 ataagcaattttgatagcaaatggtaaaataacgttaaattgtttctgtatatgctataaggtgttttcataagtcatcttcgaaaagttatcaaaataa 10490673  T
Q  562 gttgaaaaaa-gcttatgaaa 581  Q
    |||||||||| ||||||||||    
T  10490674 gttgaaaaaaggcttatgaaa 10490694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 13220395 - 13220431
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagtta 498  Q
    ||||||||||||||||||||||| |||||||||||||    
T  13220395 ataagctatttctatagaaaaagttaaaataaagtta 13220431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 581
Target Start/End: Original strand, 12194897 - 12195016
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttg-tatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||| ||||||||| ||||| |||||| |  ||  ||| |||||| |||||||||||  ||||||  | |||| || |||||||||||   ||| |||    
T  12194897 taagctgtttctataggaaaagataaaatgacattcaattgtttttggtatatgttataggttgtttatataagttatattggagaacttgtgaaaataa 12194996  T
Q  562 gttgaaaaaagcttatgaaa 581  Q
    ||||||||||||||||||||    
T  12194997 gttgaaaaaagcttatgaaa 12195016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 579
Target Start/End: Original strand, 18066075 - 18066190
Alignment:
Q  464 aagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagt 563  Q
    |||||||||||| || ||||  | ||||||||||| ||| ||||  |||| | |||||  |||||||| |||  |||||||||||||||  ||| ||||     
T  18066075 aagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataagg 18066174  T
Q  564 tgaaaaaagcttatga 579  Q
    |||||| |||||||||    
T  18066175 tgaaaatagcttatga 18066190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 28206212 - 28206307
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaa 557  Q
    ||||||||||| ||||  ||||| |||||  | |||| ||||||||| |||||||||||| ||||||| | |||  || |||||||||||| ||||    
T  28206212 ataagctatttttatatcaaaagataaaacgatgttaaattatttttttatatgttataaattgtttttataagctatattggagaacttataaaa 28206307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 521
Target Start/End: Complemental strand, 42420419 - 42420360
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||||| ||||| ||||| |||||||| |||| ||| |||||||||||| |||||    
T  42420419 ataagctatttttatagcaaaagataaaataacgttaaattgtttttgtatatgatataa 42420360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 584
Target Start/End: Complemental strand, 33319941 - 33319815
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaa-gttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaa 557  Q
    ||||||| |||||| ||||| ||| | ||| ||||| |||| | | |||||||||||  |||||  |||||||| ||   |||||||||||||||  |||    
T  33319941 tacataaactatttttatagtaaatgataacataaaagttaaactgtttttgtatatactataaactgttttcataaactatcttggagaacttatgaaa 33319842  T
Q  558 ttaagttgaaaaaagcttatgaaatgt 584  Q
     |||| |||||||||||||| ||||||    
T  33319841 ataagctgaaaaaagcttattaaatgt 33319815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 520
Target Start/End: Original strand, 3932292 - 3932353
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttata 520  Q
    |||||||| ||||||||||| ||||| ||||||||||||| || ||||| | ||||| ||||    
T  3932292 tacataagttatttctatagcaaaagataaaataaagttaaataattttgggatatgctata 3932353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 569
Target Start/End: Complemental strand, 7043847 - 7043741
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatatta-tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    ||||| ||||||||||||| ||  ||||||||||||| |||| |||||||||| |||||||| | || | | |||  |||||||| ||||||  ||||||    
T  7043847 ataagttatttctatagaacaa--taaaataaagttaaattattttttgtataagttataatctattattataagctatcttggaaaacttatgaaatta 7043750  T
Q  561 agttgaaaa 569  Q
    ||| |||||    
T  7043749 agtggaaaa 7043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 13325513 - 13325566
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtata 513  Q
    |||||||||| || ||||||||| | ||||||||||||| |||||||| |||||    
T  13325513 acataagctagttttatagaaaatgataaaataaagttaaattattttcgtata 13325566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 551
Target Start/End: Original strand, 41407243 - 41407336
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatatt-atttttgtatatgttataatttgttttcaaaagtaatcttggagaactt 551  Q
    |||||||||||||||| ||  ||||| ||||||||||||| |||  |||||||||||| ||||| || |||| | ||||  |||| ||||||||    
T  41407243 tacataagctatttctgtaccaaaagataaaataaagttaaattgttttttgtatatgctataagttatttttataagttttctttgagaactt 41407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 488 - 628
Target Start/End: Complemental strand, 17944442 - 17944303
Alignment:
Q  488 aaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgtt 587  Q
    ||||||||||| ||| |||||||||||||| ||| ||||||||| |||| |||||||| || |||  |||||||| |||||||||| ||||||| ||||     
T  17944442 aaataaagttaaattgtttttgtatatgttgtaagttgttttcataagttatcttggataatttatgaaattaagctgaaaaaagcatatgaaaagtgtc 17944343  T
Q  588 acaagttgttttcaataaattctctcaaacaatctcacaaa 628  Q
    | ||| ||||||  |||| || ||| ||||| |||||||||    
T  17944342 ataagctgtttt-tataagttgtctgaaacagtctcacaaa 17944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 601
Target Start/End: Complemental strand, 33601510 - 33601396
Alignment:
Q  486 taaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtg 585  Q
    ||||||||||||| ||||||||||||| || ||||| ||||||| | |||  ||||| |||||||||  || ||||| |||||||||||||||||| |||    
T  33601510 taaaataaagttaaattatttttgtatttgctataagttgtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaagcttatgaaaagtg 33601412  T
Q  586 ttacaagttgttttca 601  Q
    | | ||| ||||||||    
T  33601411 tcataagctgttttca 33601396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 581
Target Start/End: Complemental strand, 30571059 - 30570937
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||||||||| || |||||  |||||||||||||||||| |||||||||||||||| |||||  | |||| | ||   |  ||||||||||||  ||||    
T  30571059 tacataagctacttatatagcgaaaggtaaaataaagttaaattatttttgtatatgctataagctatttttataacctacattggagaacttatgaaat 30570960  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||  ||||||||||||||||||    
T  30570959 taacatgaaaaaagcttatgaaa 30570937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 461 - 629
Target Start/End: Original strand, 48469988 - 48470155
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    ||||||||||||||| || ||||| |||||| |||||| ||| |||||||||||  ||||| ||||||||| |||  || ||| | ||||||  ||  ||    
T  48469988 cataagctatttctacagcaaaagataaaattaagttaaattgtttttgtatataatataagttgttttcataagctattttgaataacttatgaacata 48470087  T
Q  561 agttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    || | ||||||||||||||||  ||  | ||| ||||||| |||| ||||| |||||||||||| ||||    
T  48470088 agctcaaaaaagcttatgaaaaatgccataagctgttttc-ataagttctcccaaacaatctcataaaa 48470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 628
Target Start/End: Original strand, 420304 - 420470
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||| | ||||| ||||| |||||||| |||  ||| |||||||||||| ||||| |||||| |  |||  || ||||||||||||  ||| ||    
T  420304 cataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgtttccgtaagctatattggagaacttatgaaaata 420403  T
Q  561 agttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaa 628  Q
    |||||||||| ||||  ||||  ||| | || |||||||| |||| ||||| |||||| |||||||||    
T  420404 agttgaaaaaggctttagaaaactgtcataaattgttttc-ataagttctcccaaacagtctcacaaa 420470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 611
Target Start/End: Complemental strand, 11619204 - 11619135
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctc 611  Q
    ||||||||||||  |||||||||||||||||||||||||||  ||| | ||||||||||| ||||||||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttc-ataaattctc 11619135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 629
Target Start/End: Complemental strand, 19022709 - 19022544
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaag 562  Q
    ||||||||||||||   ||||| ||||| ||  ||| ||| ||||  || ||| ||||| ||||||| | |||  || ||||||||||||  ||| ||||    
T  19022709 taagctatttctatcataaaagataaaagaactttaaattgttttaataaatgctataagttgtttttataagctatattggagaacttatgaaaataag 19022610  T
Q  563 ttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||||| | | |||||||||  ||| | |||||||||||| ||||||||| |||||||||||||||||    
T  19022609 ttgaagacaacttatgaaaattgtcataagttgttttca-taaattctcccaaacaatctcacaaaa 19022544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 631
Target Start/End: Original strand, 20526403 - 20526559
Alignment:
Q  474 tatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagc 573  Q
    ||||| ||||| ||||||||||||| ||||| |||||| ||| |||||  |||||||| |||  || |||||||||| |  ||| |||| | |||| |||    
T  20526403 tatagcaaaagataaaataaagttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagc 20526502  T
Q  574 ttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaatt 631  Q
    ||| ||||  ||| | ||  ||||||| |||| |||||||||||| ||||||||||||    
T  20526503 ttacgaaaaatgtgataaactgttttc-ataagttctctcaaacagtctcacaaaatt 20526559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 465 - 578
Target Start/End: Original strand, 39279910 - 39280023
Alignment:
Q  465 agctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagtt 564  Q
    |||||||||||| | ||||| |||||| |||||| ||| ||| |||||||||||||   || ||||| || | ||||||||||||||   ||| |||| |    
T  39279910 agctatttctattgcaaaagataaaattaagttaaattgtttgtgtatatgttataggctgatttcataaattatcttggagaacttttgaaaataagct 39280009  T
Q  565 gaaaaaagcttatg 578  Q
    ||||||||||||||    
T  39280010 gaaaaaagcttatg 39280023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 462 - 581
Target Start/End: Original strand, 34743974 - 34744092
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||| ||||| |||| ||||| | |||| || ||| ||| |||||||||||| ||||| ||||||||| |||  || |||||||||||| |||| |||    
T  34743974 ataagccatttccataggaaaagatgaaattaaatta-attgtttttgtatatggtataagttgttttcataagctatattggagaacttataaaaataa 34744072  T
Q  562 gttgaaaaaagcttatgaaa 581  Q
    |  ||||||||||| |||||    
T  34744073 ggcgaaaaaagcttgtgaaa 34744092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 529
Target Start/End: Original strand, 119852 - 119922
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtttt 529  Q
    ||||||||||||||||| || ||||| ||||||||||||| ||| ||| |||| ||| ||||| |||||||    
T  119852 tacataagctatttctacaggaaaagataaaataaagttaaattgtttgtgtaaatgctataagttgtttt 119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 581
Target Start/End: Complemental strand, 40252235 - 40252113
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    ||||||||||| || ||| | ||| | ||||| ||||||| ||  ||||||||||||||||||  | |||||| |||| |||||||||||||||  |||     
T  40252235 tacataagctagttttattgcaaatgataaaacaaagttaaatcgtttttgtatatgttataagctcttttcataagttatcttggagaacttatgaaaa 40252136  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||| ||| | ||||||| ||||    
T  40252135 taagctgatagaagcttacgaaa 40252113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 630
Target Start/End: Complemental strand, 21568541 - 21568453
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaat 630  Q
    ||||||||||||   || ||||||||||| |||||||||||  ||||| ||| ||||||| |||| ||||| |||||| |||||||||||    
T  21568541 ttggagaacttatggaactaagttgaaaagagcttatgaaaattgttataagctgttttc-ataagttctcccaaacagtctcacaaaat 21568453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 629
Target Start/End: Complemental strand, 3928052 - 3927969
Alignment:
Q  545 agaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||||||||  ||| |||||||||||||||||||||||  ||| | || ||||||| || ||||||||||||| | ||||||||||    
T  3928052 agaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataaattgtttt-aaaaaattctctcaaatagtctcacaaaa 3927969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 581
Target Start/End: Complemental strand, 15309666 - 15309572
Alignment:
Q  486 taaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    ||||||||||||| ||| |||||||||||||| ||| ||||||||| |||| || | |||||| |||  ||| |||| || ||||||| |||||||    
T  15309666 taaaataaagttaaattgtttttgtatatgttttaagttgttttcataagttatttcggagaatttatgaaaataag-tgcaaaaagcatatgaaa 15309572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Original strand, 46078089 - 46078144
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatat 514  Q
    |||||||| ||||| ||||||||||| ||||| ||||||| ||| |||||||||||    
T  46078089 tacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgtatat 46078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 580
Target Start/End: Complemental strand, 40689107 - 40688993
Alignment:
Q  466 gctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttg 565  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||  |||| | |||||  ||| |||| |||  ||| |||| ||||||  ||| |||| |     
T  40689107 gctatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctc 40689008  T
Q  566 aaaaaagcttatgaa 580  Q
    |||| ||||||||||    
T  40689007 aaaacagcttatgaa 40688993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 8960748 - 8960695
Alignment:
Q  466 gctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttat 519  Q
    |||||| |||||| ||| | ||||||||||||| ||| ||||||||||||||||    
T  8960748 gctattcctatagcaaatgataaaataaagttaaattgtttttgtatatgttat 8960695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 527
Target Start/End: Complemental strand, 28613659 - 28613594
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtt 527  Q
    ||||||||||| ||||  ||||| ||||| ||||||| ||| |||||||||| ||||||| |||||    
T  28613659 ataagctatttttataacaaaagataaaacaaagttaaattgtttttgtataagttataagttgtt 28613594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 44216903 - 44216842
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttata 520  Q
    |||||||| | ||||||||| ||||| ||||||||||||| || ||||||| ||||| ||||    
T  44216903 tacataagttctttctatagcaaaagataaaataaagttaaataatttttggatatgctata 44216842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 45264035 - 45264099
Alignment:
Q  459 tacataagctatttct--atagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    |||||||||||||| |  |||||||||| | ||||||||||| ||| |||||||||||| |||||    
T  45264035 tacataagctatttttttatagaaaaagatgaaataaagttaaattgtttttgtatatgctataa 45264099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 570
Target Start/End: Original strand, 48507667 - 48507776
Alignment:
Q  463 taagctatttctatagaaaaaggtaa-aataaagttatattatttttgtatatgttataatttgttttcaaaagtaat-cttggagaacttacaaaatta 560  Q
    |||||| ||||||||| ||||| ||| ||| |||||| ||| |||||||||||| |||||  |||||||| |||  || ||| |||||||||  ||||||    
T  48507667 taagctgtttctatagcaaaagataagaatgaagttaaattgtttttgtatatgctataaactgttttcataagccatccttagagaacttatgaaatta 48507766  T
Q  561 agttgaaaaa 570  Q
    || |||||||    
T  48507767 agctgaaaaa 48507776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 480 - 629
Target Start/End: Complemental strand, 16937990 - 16937842
Alignment:
Q  480 aaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatga 579  Q
    ||||| |||||||| |||| ||| |||||||||||| ||||| ||||||| | | |  || ||||||||||||  ||| |||| ||||||||||||||||    
T  16937990 aaaagataaaataacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaaagcttatga 16937891  T
Q  580 aatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||| ||| | ||| ||||||| |||| ||||  |||||| ||||||||||    
T  16937890 aatttgtcataagctgttttc-ataagttcttccaaacactctcacaaaa 16937842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 629
Target Start/End: Original strand, 10639898 - 10640064
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||||| |||||| || ||| ||| ||||||||||||| || | |||||| || ||   || ||||||||||||  ||| |||    
T  10639898 ataagctatttctatagcaaaagataaaattaaattaaattgtttttgtatatgtgatgagttgtttacataaactattttggagaacttatgaaaataa 10639997  T
Q  562 gttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    | |  |||||||||||||||  ||| | ||| ||||||| |||| ||||| |||||||| ||||||||    
T  10639998 gctagaaaaagcttatgaaaaatgtcataagctgttttc-ataagttctcccaaacaatatcacaaaa 10640064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 4014549 - 4014431
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||||| ||||||||||||| ||| |||||| | |  | ||||  |||||||| |||  |||||||||||||||  ||| |||    
T  4014549 ataagctatttctatagcaaaagataaaataaagttagattgtttttggaaaaatgataagctgttttcataagctatcttggagaacttatgaaaataa 4014450  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | |||||| ||||||||||    
T  4014449 gctgaaaacagcttatgaa 4014431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 462 - 629
Target Start/End: Original strand, 12425516 - 12425684
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||| |||||| ||||| ||||| ||||||||||||| ||| |||| ||||| | |||||  |||||||| |||  |||||||||||||||  ||| |||    
T  12425516 ataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataa 12425615  T
Q  562 gttgaaaaaagcttatgaaatgtgttacaagttgttttca-ataaattctctcaaacaatctcacaaaa 629  Q
    |||||||| | |||||  |   ||||  | |||||||||| |||| ||||| |||||| ||||||||||    
T  12425616 gttgaaaacaacttattgacaatgttttaggttgttttcatataagttctcccaaacagtctcacaaaa 12425684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 9107054 - 9107106
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgta 511  Q
    |||||||||||||| || |||||||| ||||||||||||| ||||||||||||    
T  9107054 tacataagctatttttaaagaaaaagataaaataaagttaaattatttttgta 9107106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 9202873 - 9202755
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||| ||| ||||| ||||||||||||| ||| ||||  |||| |  ||||  |||||||| |||| |||||| ||||||||  ||| |||    
T  9202873 ataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataa 9202774  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | || ||| ||||||||||    
T  9202773 gctggaaacagcttatgaa 9202755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 581
Target Start/End: Original strand, 25461038 - 25461155
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaag 562  Q
    |||||||||| | ||| ||||| |||| ||||||| |||| |||||||||||||||||| ||||||||| |||   | |||||||||| |  ||| ||||    
T  25461038 taagctatttttctagcaaaagataaa-taaagttgtattgtttttgtatatgttataagttgttttcataagctctattggagaactgatgaaaataag 25461136  T
Q  563 ttgaaaaaagcttatgaaa 581  Q
     ||||||| | ||||||||    
T  25461137 ctgaaaaacgtttatgaaa 25461155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 571
Target Start/End: Original strand, 29925785 - 29925895
Alignment:
Q  461 cataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatta 560  Q
    |||||||||||| ||||| ||||| |||||||  |||| ||| ||| ||||| || ||||| |||||| || |||  || ||||||||||||  ||| ||    
T  29925785 cataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtatgtgctataagttgtttacataagctatattggagaacttatgaaaata 29925884  T
Q  561 agttgaaaaaa 571  Q
    |||||||||||    
T  29925885 agttgaaaaaa 29925895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 29935473 - 29935423
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtata 513  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||||||    
T  29935473 taagctatttctttagcaaaaagtaaaataaagttaaattatttttgtata 29935423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 581
Target Start/End: Original strand, 35445997 - 35446119
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||| ||||| ||| | ||||||||||||| ||| |||||||||| | |||||  | || ||| ||| | |  |||||||||||  |||     
T  35445997 tacataagctatttttatagcaaatgataaaataaagttaaattgtttttgtatacgctataacctcttctcataagcatttgtggagaacttatgaaaa 35446096  T
Q  559 taagttgaaaaaagcttatgaaa 581  Q
    |||| ||||||||||||| ||||    
T  35446097 taagctgaaaaaagcttacgaaa 35446119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 580
Target Start/End: Original strand, 39105409 - 39105527
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||||||||||||||  |||  | |||| |||||| ||| |||| ||||| | |||||| |||||||| |||  |||||||||||||||  ||| |||    
T  39105409 ataagctatttctatagctaaatatgaaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataa 39105508  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | | |||| ||||||||||    
T  39105509 gctaaaaatagcttatgaa 39105527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 12857384 - 12857324
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttca 601  Q
    ||||||||||||||||| |||| |||||||||||| |||||  ||| | ||||||||||||    
T  12857384 ttggagaacttacaaaaataagctgaaaaaagcttgtgaaaattgtcataagttgttttca 12857324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 39594751 - 39594787
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagt 496  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39594751 acataagctatttctatagaaaaagataaaataaagt 39594787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 32372593 - 32372656
Alignment:
Q  486 taaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaac 549  Q
    ||||||||||||  ||| |||||||||||| |||||  |||||||| |||| ||||||||||||    
T  32372593 taaaataaagttgaattgtttttgtatatgctataagctgttttcacaagttatcttggagaac 32372656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 462 - 580
Target Start/End: Original strand, 706408 - 706526
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||| |||| || | ||||||  ||||| | |||| || |||| || | ||  ||| |||    
T  706408 ataagctatttctatagtaaaagataaaatatagttaaattattcttgtttaagatataatcagtttttataagttatattggtgatcctatcaaaataa 706507  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    | |||||| ||||||||||    
T  706508 gctgaaaatagcttatgaa 706526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 460 - 529
Target Start/End: Complemental strand, 24030529 - 24030459
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatatta-tttttgtatatgttataatttgtttt 529  Q
    |||||||||||| |||||| ||  | ||||||||||||| |||| |||||| ||||||||||| |||||||    
T  24030529 acataagctattgctatagcaaccgataaaataaagttaaattattttttggatatgttataagttgtttt 24030459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 468 - 569
Target Start/End: Complemental strand, 32703393 - 32703294
Alignment:
Q  468 tatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaa 567  Q
    ||||||| |||||| || ||||||||||||| ||||||| ||  |||| ||||| ||||||||| |||  |||| |||||| ||| |||| |||| ||||    
T  32703393 tatttctctagaaacagataaaataaagttaaattatttctg--tatgctataagttgttttcataagctatctaggagaatttataaaaataagctgaa 32703296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 40590472 - 40590510
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttata 500  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  40590472 ataagctacttctatagaaaaagataaaataaagttata 40590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 3735619 - 3735566
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtat 512  Q
    |||||||||||||||||||| ||||| | |||||||||||  || |||||||||    
T  3735619 tacataagctatttctatagcaaaagatgaaataaagttaatttttttttgtat 3735566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 629
Target Start/End: Complemental strand, 35534738 - 35534572
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||| ||||| ||||||||| | ||||||||||||| ||| |||||||||  ||||||  ||||||||| |||| || ||||||||||||  |||     
T  35534738 tacataagatatttttatagaaaa-gataaaataaagttaaattgtttttgtat--gttatatgttgttttcataagttatattggagaacttatgaaag 35534642  T
Q  559 taagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||||  ||||||||||| | |||  ||| | ||| ||||||| | || |||||||||||| ||||||||||    
T  35534641 taagccgaaaaaagcttgttaaaattgtcataagctgttttc-acaagttctctcaaacagtctcacaaaa 35534572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 581
Target Start/End: Original strand, 12976156 - 12976276
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatt 559  Q
    ||||||||||||||||||| ||||  ||||||||||||| |||| |||| |||||| || |||||||||| | |||  || || |||||||||  ||| |    
T  12976156 acataagctatttctatagcaaaatataaaataaagttaaattaattttttatatgctacaatttgtttttataagctatattagagaacttatgaaa-t 12976254  T
Q  560 aagttgaaaaaagcttatgaaa 581  Q
    ||| |||||||||||| |||||    
T  12976255 aagctgaaaaaagcttttgaaa 12976276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 629
Target Start/End: Original strand, 26771208 - 26771376
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaatt 559  Q
    ||||||||||||||||||| |||   ||||||||| ||| ||| |||||||||||| |||||  | |||| | |||  || || |||||||||  ||| |    
T  26771208 acataagctatttctatagtaaagcataaaataaacttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaat 26771307  T
Q  560 aagttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcacaaaa 629  Q
    ||||||||||| |||| |||||  ||| | ||| ||||||| |||| ||||| |||||| ||||||||||    
T  26771308 aagttgaaaaaggcttttgaaaattgtcataagctgttttc-ataagttctcccaaacagtctcacaaaa 26771376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 586
Target Start/End: Complemental strand, 25930682 - 25930555
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaat 558  Q
    |||||||||||||||||||| ||| | | ||||||| ||| | | |||||||||||| | ||| ||||||||| |||  ||||||||||||||   | |     
T  25930682 tacataagctatttctataggaaaggatgaaataaaattaaaatgtttttgtatatgctttaaattgttttcataagctatcttggagaacttgtgatag 25930583  T
Q  559 taagttgaaaaaagcttatgaaatgtgt 586  Q
    |||| ||||||||||||| |||| ||||    
T  25930582 taagctgaaaaaagcttacgaaaagtgt 25930555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 467 - 581
Target Start/End: Original strand, 29205758 - 29205871
Alignment:
Q  467 ctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttga 566  Q
    |||||||||||||||||| |||||| |||||| ||| |||||||||||| ||||| || |||||| ||   || |||||||| |||  ||| || ||| |    
T  29205758 ctatttctatagaaaaagataaaatgaagttaaattgtttttgtatatgctataagttattttcataaactattttggagaatttatgaaagtaggtt-a 29205856  T
Q  567 aaaaagcttatgaaa 581  Q
    |||||||||||||||    
T  29205857 aaaaagcttatgaaa 29205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 7646151 - 7646202
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtata 513  Q
    ||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  7646151 ataagctatttctataagaaaaggtaaaataaagttaaattgtttttgtata 7646202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 462 - 577
Target Start/End: Complemental strand, 16211011 - 16210896
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||| ||| | ||||||||||||| ||| ||||  |||| | ||||| ||||||||||||   |||| |  |||||||| ||| |||    
T  16211011 ataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagttgttttcaaaacctatctagtggaacttacgaaaataa 16210912  T
Q  562 gttgaaaaaagcttat 577  Q
    | |||||| |||||||    
T  16210911 gctgaaaacagcttat 16210896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 459 - 550
Target Start/End: Complemental strand, 42043473 - 42043382
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaact 550  Q
    |||||| ||||||||||||| ||||| ||||||  ||||| ||| |||||| ||||| ||||| ||||||||| |||  ||||| |||||||    
T  42043473 tacatatgctatttctatagcaaaagataaaatgcagttaaattgtttttggatatgatataagttgttttcataagctatcttagagaact 42043382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 29169009 - 29168927
Alignment:
Q  470 tttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||||||| ||||| |||||| || ||| ||||||||||||||||||||||  |||||||  |||| || ||||| ||||||    
T  29169009 tttctatagcaaaagataaaattaaattaaattatttttgtatatgttataagctgttttcctaagttatattggaaaactta 29168927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 581
Target Start/End: Original strand, 41595964 - 41596045
Alignment:
Q  502 tatttttgtatatgttata--atttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    |||||||||||||| ||||  ||||||||| | |||| || ||| | ||||||||||| ||| |||||||||||||||||||    
T  41595964 tatttttgtatatgctatataatttgtttttacaagttatattgaaaaacttacaaaaataaattgaaaaaagcttatgaaa 41596045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 552
Target Start/End: Complemental strand, 29168179 - 29168092
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    ||||||||||||||||||| ||||| |||||||||     |||||||||||||||| |||||  |||||||   ||  |||||||||||||||    
T  29168179 acataagctatttctatagcaaaagataaaataaa-----attatttttgtatatgctataagctgttttcctgagctatcttggagaactta 29168092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 4558743 - 4558802
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||||||||||  ||||| ||||||||||||| ||||||||  |||||| |||||    
T  4558743 ataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataa 4558802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 579
Target Start/End: Original strand, 38648338 - 38648413
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatga 579  Q
    |||||||||||||||| | ||||||||| |||  |||||| ||||||||  |||||| | | ||||||||||||||    
T  38648338 tttttgtatatgttatgagttgttttcataagctatcttgtagaacttatgaaattacgcttaaaaaagcttatga 38648413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 569
Target Start/End: Complemental strand, 9956934 - 9956832
Alignment:
Q  465 agctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagtt 564  Q
    |||||||||||||  ||||| |||||||||||| |||  ||||  |||| ||||||| ||||||||| ||   |||||||||||||||  ||| |||| |    
T  9956934 agctatttctataacaaaagataaaataaagttttat--ttttcctataagttataagttgttttcataatctatcttggagaacttatgaaaataagct 9956837  T
Q  565 gaaaa 569  Q
    |||||    
T  9956836 gaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 529
Target Start/End: Original strand, 16733980 - 16734041
Alignment:
Q  468 tatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtttt 529  Q
    ||||||||||| ||||| |||| |||| ||| ||| |||||||||||| ||||| |||||||    
T  16733980 tatttctatagcaaaagataaactaaacttaaattgtttttgtatatgctataagttgtttt 16734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 462 - 580
Target Start/End: Complemental strand, 20368305 - 20368187
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||| ||||||||| | |||||| |||||  ||| |||||||||  ||||||| ||||||||| |||   ||||||||||||||  ||| |||    
T  20368305 ataagctatttatatagaaaatgctaaaatgaagttgaattgtttttgtatgagttataagttgttttcataagctttcttggagaacttatgaaaataa 20368206  T
Q  562 gttgaaaaaagcttatgaa 580  Q
    |||||||  ||||||||||    
T  20368205 gttgaaactagcttatgaa 20368187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 567
Target Start/End: Complemental strand, 6910001 - 6909892
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaa-taaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaa 557  Q
    |||||||||||||||||||| |||||  |||| |||||||| ||| |||||||||||| ||||| ||||||||| ||   ||||||||||| |||  |||    
T  6910001 tacataagctatttctataggaaaagaaaaaaataaagttaaattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaa 6909902  T
Q  558 ttaagttgaa 567  Q
    ||||| ||||    
T  6909901 ttaagctgaa 6909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 462 - 626
Target Start/End: Original strand, 2735014 - 2735177
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||| ||||||  ||||| ||||||||||||| ||||||||||||||   |||||  |||||||| ||| ||||||| | ||||||  ||| |||    
T  2735014 ataagctatgtctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataa 2735113  T
Q  562 gttgaaaaaagcttatgaaatgtgttacaagttgttttcaataaattctctcaaacaatctcaca 626  Q
    |  ||||| |||||||||||  ||| | |||  |||||| |||| || ||||||||| |||||||    
T  2735114 gccgaaaacagcttatgaaaaatgtcataagccgttttc-ataagttatctcaaacagtctcaca 2735177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 463 - 579
Target Start/End: Complemental strand, 34430580 - 34430469
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaag 562  Q
    ||||||||||||||||||| |  |||||||||     ||| ||||||||||||||||||  |||||||| |||  ||||||||||| |||  ||| ||||    
T  34430580 taagctatttctatagaaataaataaaataaa-----attgtttttgtatatgttataaggtgttttcataagctatcttggagaagttatgaaaataag 34430486  T
Q  563 ttgaaaaaagcttatga 579  Q
     ||||||||||||||||    
T  34430485 ctgaaaaaagcttatga 34430469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 24626237 - 24626324
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggag 546  Q
    |||||||||||||||||||| ||| | ||||| ||||||| ||| |||||||||||  ||||| ||||||||| |||  |||||||||    
T  24626237 tacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatattctataagttgttttcataagctatcttggag 24626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 4163118 - 4163179
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||||||| |||||||| || ||||||||||||| ||| ||| ||||||||||||||    
T  4163118 acataagctatttttatagaaatagataaaataaagttaaattgtttgtgtatatgttataa 4163179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 4224739 - 4224800
Alignment:
Q  460 acataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataa 521  Q
    ||||||||||||| |||||||| || ||||||||||||| ||| ||| ||||||||||||||    
T  4224739 acataagctatttttatagaaatagataaaataaagttaaattgtttgtgtatatgttataa 4224800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 463 - 530
Target Start/End: Complemental strand, 29296417 - 29296350
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttc 530  Q
    ||||| ||||||||  |||||| ||||||||||||| |||||||||||||| | ||||| ||||||||    
T  29296417 taagcgatttctatgaaaaaagataaaataaagttaaattatttttgtataaggtataagttgttttc 29296350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 430501 - 430452
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgta 511  Q
    |||||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  430501 ataagctatttctatataaaaagatgaaataaagttaaattatttttgta 430452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 581
Target Start/End: Original strand, 6536602 - 6536679
Alignment:
Q  504 tttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    |||||||||||| ||||| ||||||| | |||  || |||||||| |||  ||| |||||||||||||||||||||||    
T  6536602 tttttgtatatgctataagttgtttttagaagctatattggagaatttatgaaaataagttgaaaaaagcttatgaaa 6536679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 580
Target Start/End: Original strand, 769087 - 769201
Alignment:
Q  465 agctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaagtt 564  Q
    |||||||||||||  ||||| |||||||||||||  || |||||||||| | |||||  |||||||| |||  | ||| ||| |||||  ||| ||||||    
T  769087 agctatttctataacaaaagctaaaataaagttaatttttttttgtataagctataaactgttttcataagctaactt-gaggacttaagaaagtaagtt 769185  T
Q  565 gaaaaaagcttatgaa 580  Q
    ||||| ||||||||||    
T  769186 gaaaacagcttatgaa 769201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 529
Target Start/End: Original strand, 6200504 - 6200571
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgtttt 529  Q
    |||||||| || ||||| |||||||||||||| | |  |||||||||||||||| ||||| |||||||    
T  6200504 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttt 6200571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Original strand, 8147644 - 8147699
Alignment:
Q  459 tacataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatat 514  Q
    |||||||||||||| ||||| ||||| ||||||||||||  ||| |||||||||||    
T  8147644 tacataagctatttttatagcaaaagataaaataaagttgaattgtttttgtatat 8147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 569
Target Start/End: Complemental strand, 9093681 - 9093574
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    ||||||||||||||||  ||||| ||||||||||||| ||| |||| ||||| | |||||  |||||||| |||   |||| |||||||||  ||| |||    
T  9093681 ataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataa 9093582  T
Q  562 gttgaaaa 569  Q
    | ||||||    
T  9093581 gctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 581
Target Start/End: Complemental strand, 14926915 - 14926796
Alignment:
Q  462 ataagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaacttacaaaattaa 561  Q
    |||||||||||| | || ||| | || ||||||| ||  || ||||||||||||||||||  ||||| ||||||  |||||||| | |||| |||| |||    
T  14926915 ataagctatttccacaggaaatgatagaataaaggtaagttgtttttgtatatgttataagctgtttccaaaagctatcttggacagcttataaaaataa 14926816  T
Q  562 gttgaaaaaagcttatgaaa 581  Q
    ||| ||| ||| ||||||||    
T  14926815 gtttaaataagtttatgaaa 14926796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 601
Target Start/End: Original strand, 9763566 - 9763644
Alignment:
Q  523 ttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaatgtgttacaagttgttttca 601  Q
    ||||||||| |||  || ||| ||||||||  ||||||||||||||||||||||| ||| |||| | ||| ||||||||    
T  9763566 ttgttttcataagctatattgtagaacttatgaaattaagttgaaaaaagcttatcaaaagtgtcataagctgttttca 9763644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 552
Target Start/End: Original strand, 1402942 - 1403031
Alignment:
Q  463 taagctatttctatagaaaaaggtaaaataaagttatattatttttgtatatgttataatttgttttcaaaagtaatcttggagaactta 552  Q
    |||||||||||||||  ||||| ||||||||||||| | ||||||  |||| | ||||| ||||||||| |||  ||| |||||| ||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatctta 1403031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 581
Target Start/End: Original strand, 58748 - 58806
Alignment:
Q  523 ttgttttcaaaagtaatcttggagaacttacaaaattaagttgaaaaaagcttatgaaa 581  Q
    ||||||||| |||  || ||| ||||||||  |||||||||||||||||||||||||||    
T  58748 ttgttttcataagctatgttgaagaacttatgaaattaagttgaaaaaagcttatgaaa 58806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 207623 - 207582
Alignment:
Q  541 ttggagaacttacaaaattaagttgaaaaaagcttatgaaat 582  Q
    |||||||||||| |||| ||||||||||||||| ||||||||    
T  207623 ttggagaacttataaaaataagttgaaaaaagcgtatgaaat 207582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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