View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6995_low_13 (Length: 386)
Name: NF6995_low_13
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_13 |
 | |
|
| [»] scaffold0144 (2 HSPs) |
| | |
|
| [»] scaffold0133 (4 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 37128 - 36755
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37128 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
37029 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgata |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37028 |
gatttagctcagtctattatgggagaagaatgtgtctcttgtgatgtttcaaagttgactaatttgccaattagagttcaccatatcaggctgtttgata |
36929 |
T |
|
| Q |
201 |
acaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36928 |
acaaatcaaaagatgactacatgattcccttccaaaatgttgattccttgcgaactttccttgagtatacgcgaccttgcaagaatttagatgcgttgct |
36829 |
T |
|
| Q |
301 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36828 |
atcaagcactcctctccgagctttacgtaccagttcttatcaactctcgtcattgaagaatttaatacatttga |
36755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 35423 - 35329
Alignment:
| Q |
280 |
caagaatttagatgcgttgctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35423 |
caagaatttagatgcgttgctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcgtcattgaagaatttaatacatttga |
35329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 16657650 - 16657277
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16657650 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagtaggtaacattacatttaaaatgcatgatttagtccat |
16657551 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgata |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16657550 |
gatttagctcagtctattatgggagaagaatgtgtctcttgtgatgtttcaaagttgactaatttgccaattagagttcaccatatcagcctgtgtgata |
16657451 |
T |
|
| Q |
201 |
acaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
16657450 |
acaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgaccttgcaagaatttagatgcgtttct |
16657351 |
T |
|
| Q |
301 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16657350 |
atcaagcactcctctccgagctttatgtataagttcttatcaactctcgtcattgaagaatttaatacatttga |
16657277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 16787605 - 16787240
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16787605 |
taatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagattttgttggtaacattacattcaaaatgcatgattttatccat |
16787506 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgata |
200 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||| | |||| |||||| |||||||||||||||||| ||||||||||||||||||| || || ||||||| |
|
|
| T |
16787505 |
gatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgactaatttttcaattagagttcaccatataagtctctttgata |
16787406 |
T |
|
| Q |
201 |
acaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| | || || |||||| ||| || |||||| |
|
|
| T |
16787405 |
acaaatcaaaagatgactacatgattcccttccaaaaatttgattccttgcgaacctttcttgagtataaaccaccttccaagaacttaaatatgttgct |
16787306 |
T |
|
| Q |
301 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaat |
366 |
Q |
| |
|
||| ||||| ||||| ||||||||| | |||||| | |||||||||||||||||| || |||||| |
|
|
| T |
16787305 |
atctagcacccctcttcgagctttacatgcaagttttcatcaactctcatcattgatgagtttaat |
16787240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 3 - 374
Target Start/End: Complemental strand, 16987090 - 16986719
Alignment:
| Q |
3 |
atgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatga |
102 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16987090 |
atgaggtatggaatcaattatggcaaagatcattttttcaagaagttaaatctgatttaacaggtaacattacattcaaaatgcatgattttatccatga |
16986991 |
T |
|
| Q |
103 |
tttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgataac |
202 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||| |
|
|
| T |
16986990 |
tttagctcaatctattatgggagaagaatgtatttcttatgatgtttcaaagttgactaatttgtcaattagagttcaccatatgagtctctttgataaa |
16986891 |
T |
|
| Q |
203 |
aaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgctat |
302 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||||||||||||| || |||||||||| | || | |||||||||| ||||| | |||| |
|
|
| T |
16986890 |
aaatcaaaacatgattacatgattccctgccaaaaagttgattccttgcgaacctttcttgagtataaacaaccctccaagaatttaaatgcgctactat |
16986791 |
T |
|
| Q |
303 |
caagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||| |||||||| ||||||||| |||||||||| ||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
16986790 |
caaaaactcctcttcgagctttacatacaagttctcatcaactatcatcattgaagagtttaatgcatttga |
16986719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 17069144 - 17068768
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17069144 |
taatgagatatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagatttagcaggtaacattacatttaaaatgcatgatttagtccat |
17069045 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaag-ttgactaattttccaattagagttcaccatatcaggctg-tttga |
198 |
Q |
| |
|
||||||||| ||||| |||| ||| |||||||||| ||| ||| | | |||| || |||||| | ||| ||||| ||||||||| ||| || ||||| |
|
|
| T |
17069044 |
gatttagctaagtctgttattggagaagaatgtgtggcttctga-gcctaaaagcttaactaatctgtcaactagagctcaccatat-aggttgctttga |
17068947 |
T |
|
| Q |
199 |
taacaaatcaaaa---gatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcg |
295 |
Q |
| |
|
|| ||| |||| ||| || |||||||||| ||| |||||||||| ||||||||||| || ||||| || | | | ||| | || ||||| | |
|
|
| T |
17068946 |
taccaagagaaaatttgattacaacatgattcctttcaaaaaagttgaatccttgcgaacctttcttgaacttaaaccaacctacaaaagttcagatgtg |
17068847 |
T |
|
| Q |
296 |
ttgctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
|||||||| | || | |||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17068846 |
ttgctatcgatcatttctctccgagctttacgttcaggttcttatcaactctcgtcattgaagaatttaatacatttga |
17068768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16868523 - 16868655
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868523 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaaatcaaatcagatttagtaggtaacattacattcaaaatgcatgatttagtccat |
16868622 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgt |
133 |
Q |
| |
|
||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
16868623 |
gatttagctaagtctgttattggagaagaatgt |
16868655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 16796799 - 16796432
Alignment:
| Q |
9 |
tatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagc |
108 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16796799 |
tatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagatttagcaggtaacattacattcaaaatgcatgatttagtgcatgatttagc |
16796700 |
T |
|
| Q |
109 |
tcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgataacaaatca |
208 |
Q |
| |
|
| ||||| |||||| | |||||||||| ||| ||| | | || || |||||| | ||| ||||||||||||||| || |||| | ||| || |
|
|
| T |
16796699 |
taagtctgttatggtagaagaatgtgtggcttatgaggctgaaagcttaactaatctgtcaagtagagttcaccatataagttgctttgtttctaaaaca |
16796600 |
T |
|
| Q |
209 |
aaagatgact---acatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgac---attgcaagaatttagatgcgttgctat |
302 |
Q |
| |
|
||| ||||| |||||||||| ||| |||||||||| ||||||||||| || ||||| | || | || || |||||||||| ||||| || |
|
|
| T |
16796599 |
aaatttgactacaacatgattcctttcaaaaaagttgaatccttgcgaacctttcttgaatttaaaccacccaccaccataaatttagatgtgttgccat |
16796500 |
T |
|
| Q |
303 |
caagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacat |
370 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
16796499 |
caatcgttcctctccgagctttacgtacaagttcttgtcaattctcttcattgaagaatttaatacat |
16796432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16780737 - 16780627
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16780737 |
taatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagattttgtaggtaacattacattcaaaatgcatgatttagtccat |
16780638 |
T |
|
| Q |
101 |
gatttagctca |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
16780637 |
gatttagctca |
16780627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 16868823 - 16868887
Alignment:
| Q |
310 |
tcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868823 |
tcctctccgagctttagctacaagttcatttcaactctcatcattgaagaatttaatacatttga |
16868887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 16843141 - 16843068
Alignment:
| Q |
301 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||| |||||||||| | |||||||||||||| ||||||| |
|
|
| T |
16843141 |
atcaatcactcctctccgagcattacgtacaagttcttctcaactctcagccttgaagaatttaatccatttga |
16843068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 16843443 - 16843342
Alignment:
| Q |
2 |
aatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatg |
101 |
Q |
| |
|
|||||||| ||||||||| |||| || || ||||||||||||||||||||| || || || |||||| |||||||||||||||||||| || |||||| |
|
|
| T |
16843443 |
aatgaggtgtggaatgaactataccagagatcattttttcaagaagtcgaaacacatgaagaaggtaaagttacattcaaaatgcatgatatattccatg |
16843344 |
T |
|
| Q |
102 |
at |
103 |
Q |
| |
|
|| |
|
|
| T |
16843343 |
at |
16843342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 16780507 - 16780441
Alignment:
| Q |
307 |
cactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttg |
373 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||| ||||| |||||||||||||||| |||||| |
|
|
| T |
16780507 |
cactcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttg |
16780441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 18873723 - 18873845
Alignment:
| Q |
11 |
tggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctc |
110 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| || | ||| | ||| | ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
18873723 |
tggaatgaattatatgcgagatcattttttcaagaagtcaaaactgataaaaagggtgaggttacattcaaaatgcatgatttaattcatgatttagctc |
18873822 |
T |
|
| Q |
111 |
agtctattatgggaaaagaatgt |
133 |
Q |
| |
|
|||| |||| ||| |||||||| |
|
|
| T |
18873823 |
agtccattacaggagaagaatgt |
18873845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 18806790 - 18806851
Alignment:
| Q |
72 |
ttacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaaaagaatgt |
133 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
18806790 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgt |
18806851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 12487 - 12135
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| | |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
12487 |
taatgaggtatggaatgaattataccaaaggtcattatttgaagaagttaaatcagattttgtaggtaacattactttcaaaatgcatgattttgtccat |
12388 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgata |
200 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| | |||| |||| |||||| || || ||||| ||||||||||||||||||| || || ||||||| |
|
|
| T |
12387 |
gatttagcagtgtctattatgggagatgaatgtatttcttcagatgcttcaaatttaacaaatttgtcaattagagttcaccatataagtctctttgata |
12288 |
T |
|
| Q |
201 |
acaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgct |
300 |
Q |
| |
|
| |||| | | |||||||||||||||||||||||||| |||||||||||||||| || |||||||||| | || | |||||| |||||| ||| || |
|
|
| T |
12287 |
aaaaattcagatatgactacatgattcccttccaaaaatttgattccttgcgaacctttcttgagtataaaccaccctcaaagaatctagatgtgtttct |
12188 |
T |
|
| Q |
301 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcat |
353 |
Q |
| |
|
||||| |||| | || ||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
12187 |
atcaaccacttcgcttcgagctttacatacaaagtctcatcgactctcatcat |
12135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 17693 - 17508
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17693 |
taatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatcagattttgtaggtaacattacattcaaaatgcatgatttagtccat |
17594 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatat |
186 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||||| ||| | | ||||||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
17593 |
gatttagctcattccattattggagaagaatgtgtggcttctaaggtttcaagcttggctgatttgtcaattagagttcaccatat |
17508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 8143 - 7962
Alignment:
| Q |
3 |
atgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatga |
102 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
8143 |
atgaggtatggaatcaattgtggcaaagatcattttttcaagaagttaaatctgatttagcaggtaacattacattccgaatgcatgattttatccatga |
8044 |
T |
|
| Q |
103 |
tttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccat |
184 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||| |||||||||| | | ||||||| | ||||| | ||||||||| |
|
|
| T |
8043 |
tttagctcagtctattatggaaaaagaatgtatttcttatgatgtttcagattcgactaatgtgtcaattggcgttcaccat |
7962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 374
Target Start/End: Complemental strand, 7916 - 7745
Alignment:
| Q |
203 |
aaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgctat |
302 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||||||||| || |||||||||| | || | |||||||||||||| ||| || | |
|
|
| T |
7916 |
aaatcaaaatatgaccacataattcccttccaaaaagttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttagatgtgtttctgt |
7817 |
T |
|
| Q |
303 |
caagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
||||||| |||| |||| ||| |||| |||| || ||||||||| |||||||| |||| | ||||||| |
|
|
| T |
7816 |
caagcacctctcttcgagttttgcttacacgttcaaatgaactctcattattgaagagtttagtgcatttga |
7745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 38939882 - 38940016
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38939882 |
taatgaggtatggaatgaattataccaaaggtcattttttcaagaagtcaaatcagattttgtaggtaacattacattcaaaatgcatgatttaatccat |
38939981 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgt |
135 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||| |
|
|
| T |
38939982 |
gatttagctcagtctgtaatgggagaagaatgtgt |
38940016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 7053789 - 7053974
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||| ||| ||||||||||| |||||||||||||| || ||| |
|
|
| T |
7053789 |
taatgaggtatggaatgaattatatcaaagatcattttttcaagaagttaaatctgatatagtagggaacattacatttaaaatgcatgatttggttcat |
7053888 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatat |
186 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||| ||| ||||||| ||| | |||| ||||||||||||||||||| |
|
|
| T |
7053889 |
gatttagctcagtccattatgggagaagaatgtgtggcttctgaggtttcaagcttggccgatttgtcaattagagttcaccatat |
7053974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 38940185 - 38940251
Alignment:
| Q |
307 |
cactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaatacatttg |
373 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||| ||||| |||||||||||||||| |||||| |
|
|
| T |
38940185 |
cactcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttg |
38940251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 13377730 - 13377362
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||||||||||||| |||||||| | | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13377730 |
taatgaggtatgggatgagttatgccaaagatcattttttcaagaagttaaatcagatgtggtaggtaacataacattcaaaatgcatgatttagtccat |
13377631 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgtctcttgtgatgtttcaaagttgactaattttccaattagagttcaccatatcaggctgtttgata |
200 |
Q |
| |
|
||||||||||| || || |||||| |||||||||| ||| ||| |||| || |||||| | || |||||||| ||||||||| || ||||||| |
|
|
| T |
13377630 |
gatttagctcaatccataatgggagaagaatgtgtggcttctgaggttttaagcttgactgacttgtcaattagaactcaccatataagttgctttgata |
13377531 |
T |
|
| Q |
201 |
acaaatcaaaagatgact---acatgattcccttccaaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgtt |
297 |
Q |
| |
|
||| |||| ||||| |||||| ||||| |||||||||| ||||||||||| || ||||||| | | || ||||| | ||||||| ||| |
|
|
| T |
13377530 |
ctaaaggaaaatttgactacaacatgacgtccttcgaaaaagttgaatccttgcgaacctttcttgagttcaaaccaccctgcaaaattttagatttgtt |
13377431 |
T |
|
| Q |
298 |
gctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcatcattgaagaatttaat |
366 |
Q |
| |
|
| ||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
13377430 |
tccatcaatcactcctctccgagctttacgtacaagttcttttcaactctcaggattgaagaatataat |
13377362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8789 - 8655
Alignment:
| Q |
1 |
taatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccat |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8789 |
taatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatccgattttgtaggtaacattactttcaaaatgcatgatttagtccat |
8690 |
T |
|
| Q |
101 |
gatttagctcagtctattatgggaaaagaatgtgt |
135 |
Q |
| |
|
||||||||||| ||| |||||||| |||| ||||| |
|
|
| T |
8689 |
gatttagctcaatctgttatgggagaagagtgtgt |
8655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 374
Target Start/End: Complemental strand, 20153846 - 20153706
Alignment:
| Q |
233 |
caaaaagttgattccttgcgaactttccttgagtatacgcgacattgcaagaatttagatgcgttgctatcaagcactcctctccgagctttatgtacaa |
332 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||| | || | |||||||||| ||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
20153846 |
caaaaagttgattccttgcggacctttcttgagtataaaccaccctccaagaattta-atgtgttcctatcaagcactcctctccgagctttacgtacaa |
20153748 |
T |
|
| Q |
333 |
gttcttatcaactctcatcattgaagaatttaatacatttga |
374 |
Q |
| |
|
|| ||| |||||||||| || |||||| |||||||||||||| |
|
|
| T |
20153747 |
gtccttttcaactctcaacaatgaagactttaatacatttga |
20153706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 8920 - 8859
Alignment:
| Q |
72 |
ttacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaaaagaatgt |
133 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
8920 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgt |
8859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 4239 - 4178
Alignment:
| Q |
72 |
ttacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaaaagaatgt |
133 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
4239 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgt |
4178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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