View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_14 (Length: 367)
Name: NF6995_low_14
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 38655652 - 38655308
Alignment:
| Q |
18 |
ggatacaatctcatactctcactcagcgcggcgtgtgtataaaccattgtcttcacttcatcataatccaaagattcagatttctcatttatttccttca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38655652 |
ggatacaatctcatactctcactcagcgcggcgtgtgtataaaccattgtcttcacttcatcataatccaaagattcagatttcttatttatttccttca |
38655553 |
T |
|
| Q |
118 |
aaatttcctcctcaacccgtggatttttccacaataaccnnnnnnnccacgttaaagctgcagaagttgtatctttaccggctaaaataaaacttataac |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38655552 |
aaatttcctcctcaactcgtggatttttccacaataaccaaaaaaaccacgttaacgctgcagaagttgtatctttaccggctaaaataaaacttataac |
38655453 |
T |
|
| Q |
218 |
tatatccgttacgaaatcttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtgaattattctcttttaattctttcnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38655452 |
tatatccgttacgaaatcttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtgaatcattctcttttaattctttcttt |
38655353 |
T |
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| Q |
318 |
nnnncgcgaactattttgttcgcgaattctcttatctctgctact |
362 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||| |||| |
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| T |
38655352 |
ttttcgcgaactattttgttcgcgtattctcttatttctgttact |
38655308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 38642744 - 38642470
Alignment:
| Q |
18 |
ggatacaatctcatactctcactcagcgcggcgtgtgtataaaccattgtcttcacttcatcataatccaaagattcagatttctcatttatttccttca |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38642744 |
ggatacaatctcatactctcactcagcgcggcgtgtgtataaaccattgtcttcacttcatcataatccaaagatgtagatttctcatttatttccttca |
38642645 |
T |
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| Q |
118 |
aaatttcctcctcaacccgtggatttttccacaataaccnnnnnnnccacgttaaagctgcagaagttgtatctttaccggctaaaataaaacttataac |
217 |
Q |
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|||||||||| || ||||||||||||||||| ||||||| |||||| || ||||||||||||| |||||| ||||| || ||||||||||| || |
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| T |
38642644 |
aaatttcctcttcgacccgtggatttttccataataaccaaaaaaaccacgtcaacgctgcagaagttgaatcttttccggccaatataaaacttattac |
38642545 |
T |
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| Q |
218 |
tatatccgttacgaaatcttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtga |
292 |
Q |
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|||| ||||| ||||||||||| |||||| ||||||||| || || || |||||||||| || |||||||| |
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| T |
38642544 |
aatatttgttacaaaatcttcctcaaaatgacttgaacttaacaaacgcgataacatgtcttcagtttgaagtga |
38642470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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