View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_16 (Length: 327)
Name: NF6995_low_16
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 53445950 - 53445641
Alignment:
| Q |
18 |
tacattaattagtaattgaaccaagctttcaaaccgtagccgtgttgataactagtacacggtaatctatttctacacgaaatttccattttccagcacc |
117 |
Q |
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| T |
53445950 |
tacattaattagtaattgaaccaagctttcaaaccgtagccgtgttgataactagtacacggtaatctatttctacacgaaatttccattttccagcacc |
53445851 |
T |
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| Q |
118 |
actttccttaaccaaccatcaagtttatttatcgtttaattaatctacaaaaattcctctaatttaatatattcacattcaaacactccatctttgaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53445850 |
actttccttaaccaaccatcaagtttatttatcgtttaattaatctacaaaaattcctttaatttaatatattcacattcaaacactccatctttgaact |
53445751 |
T |
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| Q |
218 |
tactcctataaataatctttcacccacctacaataataatcatttgcacacaaactcttcaatcttttacaacatgagcacacacaatcaaaagcagaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53445750 |
tactcctataaataatctttcacccacctacaataataatcatttgcacacaaactcttcaatcttttacaacatgagcacacacaatcaaaagcagaac |
53445651 |
T |
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| Q |
318 |
aagtctttac |
327 |
Q |
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|||||||||| |
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| T |
53445650 |
aagtctttac |
53445641 |
T |
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