View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6995_low_19 (Length: 291)

Name: NF6995_low_19
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6995_low_19
NF6995_low_19
[»] chr1 (3 HSPs)
chr1 (12-272)||(15594002-15594262)
chr1 (24-272)||(4679507-4679752)
chr1 (215-255)||(29464835-29464875)
[»] chr7 (6 HSPs)
chr7 (21-266)||(8586659-8586901)
chr7 (21-269)||(8615685-8615930)
chr7 (18-140)||(3146363-3146485)
chr7 (23-140)||(8645976-8646093)
chr7 (23-134)||(8640653-8640764)
chr7 (24-85)||(13334321-13334382)
[»] chr2 (1 HSPs)
chr2 (20-269)||(16662947-16663193)
[»] chr4 (1 HSPs)
chr4 (18-199)||(30774289-30774470)
[»] chr8 (2 HSPs)
chr8 (25-134)||(43743918-43744027)
chr8 (28-138)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (25-113)||(28219041-28219129)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 15594262 - 15594002
Alignment:
Q  12 gaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594262 gaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataagg 15594163  T
Q  112 atgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatga 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  15594162 atgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatga 15594063  T
Q  212 agtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtc 272  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15594062 agtagatgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgtagtc 15594002  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 4679507 - 4679752
Alignment:
Q  24 gaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaa 123  Q
    |||||| |||||||  ||||||||||  ||||||||| |||||| ||    |||||||||||  | |  |||||| | ||||| |||||||| || ||||    
T  4679507 gaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaa 4679606  T
Q  124 aactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttct 223  Q
    | ||||||| | | |||  |  |||||| || | |||||||||||||||  | || |||||||||||||| ||  | |||   || ||| ||||||||||    
T  4679607 agctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacag---aaagaaatagatgttct 4679703  T
Q  224 tgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtc 272  Q
    ||||| | ||||||||||| | ||||||||||| ||||| |||| ||||    
T  4679704 tgaggatcatctgaaggagttggagagcatgttggaaaagcttgaagtc 4679752  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29464875 - 29464835
Alignment:
Q  215 agatgttcttgagggtaatctgaaggagctcgagagcatgt 255  Q
    |||||||||||||||| ||||| ||||||| ||||||||||    
T  29464875 agatgttcttgagggtcatctggaggagctggagagcatgt 29464835  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 8586659 - 8586901
Alignment:
Q  21 gctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaat 120  Q
    ||||| ||| |||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| | |||     
T  8586659 gctgaggatcagaaattcctaaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaac 8586758  T
Q  121 taaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgt 220  Q
    ||||   ||||||| || |||||| |||||| |||  |||||||||| ||||| ||||||||||||||   |||||| ||||| | |||||  |||||||    
T  8586759 taaagtgctcttctcaaaaagttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgat---aagaataaccaggagaatgacatagatgt 8586855  T
Q  221 tcttgagggtaatctgaaggagctcgagagcatgttcgaaaacctt 266  Q
    ||||| || | ||||||||||||| ||||||||||| ||| |||||    
T  8586856 tcttgtggatcatctgaaggagcttgagagcatgttggaagacctt 8586901  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 8615930 - 8615685
Alignment:
Q  21 gctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaat 120  Q
    ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||  ||||||||||||| |||||||| ||||||||||||||    |    
T  8615930 gctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatttacaagttgaggaatgctctaaagaataaggatgttgctt 8615831  T
Q  121 taaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgt 220  Q
    |||| || || ||| || |||||  ||| || ||   ||||||||| |||||| ||||||||||||||   | |||| ||||||| | ||||||||| ||    
T  8615830 taaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatttgcttgat---aggaataaccagcagagtgaagtagaagt 8615734  T
Q  221 tcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgta 269  Q
    ||| || | | |||||||||||||| | || ||||| ||| ||||||||    
T  8615733 tctcgaagatcatctgaaggagctcaaaagtatgttggaagaccttgta 8615685  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 3146485 - 3146363
Alignment:
Q  18 cgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtca 117  Q
    |||| ||| ||||| ||||| |||||||||||  | |||||||||||||||||| | |||||||||||| ||| ||||||| | ||||| |||||||| |    
T  3146485 cgtgttgaggatgaaaaatttctaaggaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtga 3146386  T
Q  118 aattaaaactctcttctaaagaa 140  Q
    |  |||| ||||| ||| |||||    
T  3146385 atataaatctctcctctcaagaa 3146363  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 8646093 - 8645976
Alignment:
Q  23 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 122  Q
    |||||||||||||||||||||||||||  | |||||||||| ||||||  | ||  |||| ||| |||  || ||||| ||||  |||||||| ||||||    
T  8646093 tgaagatgagaaattcctaaggaaggccaatgtaatgaatggattagaccattgcatttataagctgaagaaagctctaaagaggaaggatgttaaatta 8645994  T
Q  123 aaactctcttctaaagaa 140  Q
    || ||||| |||||||||    
T  8645993 aatctctcatctaaagaa 8645976  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 8640653 - 8640764
Alignment:
Q  23 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 122  Q
    ||||| |||||||||||||||||||||  |  ||||||||| ||||||  | ||  |||||||| |||  |||||||| |||||||||||| | ||| ||    
T  8640653 tgaagctgagaaattcctaaggaaggccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaataaggatattaaacta 8640752  T
Q  123 aaactctcttct 134  Q
    || |||||||||    
T  8640753 aagctctcttct 8640764  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 13334321 - 13334382
Alignment:
Q  24 gaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaa 85  Q
    |||||| |||||||| ||||||||||  ||||||||||||||||||||   |||||||||||    
T  13334321 gaagataagaaattcttaaggaaggccaaggtaatgaatgcattagattcttgtgtttacaa 13334382  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 16662947 - 16663193
Alignment:
Q  20 tgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaa 119  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||| ||||| |||||||| ||||||||| ||||||||    
T  16662947 tgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattgaggaatgctctaaagaataagaatgtcaaa 16663046  T
Q  120 ttaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatg 219  Q
    ||||| || ||||   || ||  || |||||| |||  ||||||||| ||||||  | |||||||| || ||||||   |||||   |||||||||||||    
T  16663047 ttaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggtggctaaagatttgcttcatgagaaga---accaggggaatgaagtagatg 16663143  T
Q  220 ttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgta 269  Q
    ||||||||| | ||||||||||||| ||||| ||||| ||  ||||||||    
T  16663144 ttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgta 16663193  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 30774470 - 30774289
Alignment:
Q  18 cgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtca 117  Q
    |||||||||||||||||||||||||||||| |   |||||||||||||||||||  |||  ||||||||||||| |||| ||| |||| |||||| || |    
T  30774470 cgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctgcatttacaagttgaggaatggtctaaagattaaggacgtaa 30774371  T
Q  118 aattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatca 199  Q
    | ||||| || || ||| || || | | |||||| | || ||||||| |||||||| ||||||||||||||||||| |||||    
T  30774370 atttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggctacaaatttgcttgataagaataatca 30774289  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 43744027 - 43743918
Alignment:
Q  25 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaa 124  Q
    ||||||||||||| || ||||| ||  | |||||||||||||||||||| || |||||||||||||| |||||| | |||||||||||||| ||||||||    
T  43744027 aagatgagaaatttcttaggaaagccaatgtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaa 43743928  T
Q  125 actctcttct 134  Q
     || ||||||    
T  43743927 gctttcttct 43743918  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 43445894 - 43445783
Alignment:
Q  28 atgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtg-tttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaac 126  Q
    |||||||||| || ||||||||  | |||||||||||||||||||| || | |||||| |||||| |||| | | |||||||||||| | |||||||| |    
T  43445894 atgagaaatttcttaggaaggccaatgtaatgaatgcattagatgaatgggttttacaggttgaggaatgttgtaaagaataaggatattaaattaaagc 43445795  T
Q  127 tctcttctaaag 138  Q
    |||| |||||||    
T  43445794 tctcgtctaaag 43445783  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 28219129 - 28219041
Alignment:
Q  25 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggat 113  Q
    ||||||| ||||| |||||||||||  | || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  28219129 aagatgaaaaatttctaaggaaggccaatgtcatgaatgcattagatgactgcgtttacaagttgaggaatgctctaaagaataaggat 28219041  T

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