View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_2 (Length: 579)
Name: NF6995_low_2
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 1174260 - 1174491
Alignment:
| Q |
21 |
gtaaaagtgaaaaaatgtgaactcatctcatcatacatgtgggtcaaaacgactatttatagtatttgatctgatgataggtttcttgttgattgcaatt |
120 |
Q |
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| T |
1174260 |
gtaaaagtgaaaaaatgtgaactcatctcatcatacatgtgggtgaaaccgactatttatagtagttgatctgatgataggttccttgttgattgcaata |
1174359 |
T |
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| Q |
121 |
tttctccttagcttcactctagttgttatgaggttaatccagatatcgaagtaatcaaccgcctaaatagggcgacacttactagtttaagtgagtctta |
220 |
Q |
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| T |
1174360 |
tttctccttagctttactctagttgttatgaggttaatccagatatcgaagtaaccaaccgcctaaatagggcgacacttactagtttaagtgagtctta |
1174459 |
T |
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| Q |
221 |
tgtaagtaggaacaatccatgtatatttgagt |
252 |
Q |
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| T |
1174460 |
tgtaagtaggaacaatccatgtatatttgagt |
1174491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 265 - 579
Target Start/End: Original strand, 1192118 - 1192428
Alignment:
| Q |
265 |
atcataatacatctgcaattgagcactccagtcacaa-ttctccgcaatatcaactacaatttaatttataaaacaaatgtatgtaactttactttgatg |
363 |
Q |
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| T |
1192118 |
atcataatacatctacaattgagcatgccagtcacaaattctccccgatatcaactacaatttaatttataaaactaatgtatgtaactttactttgatt |
1192217 |
T |
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| Q |
364 |
gtgttcaactatatatggagttgggcacacagtggatgaagtcaaaaaagtgactatnnnnnnngtgtaatctagtatgcacacatttggtgtgaaaatg |
463 |
Q |
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| T |
1192218 |
gtgttcaactat----ggagttgggcacacagtggattaagtcaaaaaagtgactataaaaaaagtgtaatctaatatgcacacaattggtatgaaaatg |
1192313 |
T |
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| Q |
464 |
aactcctttggtgtaacatgtcaagtgtcttctaactagcttaaaaaactttttcttctggtattttgagttcatgaacgctcaagactttccaaacata |
563 |
Q |
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| T |
1192314 |
aactc-tttggtgtaacatgtcaagtgtcttctaactagcttaaaaaactttttcttctcgtattttgagttcttgaacactcaagactttctaaacata |
1192412 |
T |
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| Q |
564 |
actacttttttaaaac |
579 |
Q |
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| T |
1192413 |
actacttctttaaaac |
1192428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 45650533 - 45650450
Alignment:
| Q |
334 |
aaaacaaatgtatgtaactttactttgatggtgttcaactatatatggagttgggcacacagtggatgaagtcaaa-aaagtgactat |
420 |
Q |
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| T |
45650533 |
aaaactaatgtatgtaactttactatgacagtattcaactat----ggagctgggcacacagtggatgaagttaaagaaagtgactat |
45650450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 30054900 - 30054809
Alignment:
| Q |
326 |
taatttataaaacaaatgtatgtaactttactttgatggtgttcaactatatatggagttgggcacacagtggatgaagtcaaa-aaagtgactat |
420 |
Q |
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| T |
30054900 |
taatttacaaaactaatgtatgtaactttactatgacaatgttcaac----tatggaatcgggcacacagtggattaagttaaagaaagtgactat |
30054809 |
T |
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