View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_20 (Length: 290)
Name: NF6995_low_20
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 54657447 - 54657169
Alignment:
| Q |
12 |
acatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcag |
111 |
Q |
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| T |
54657447 |
acatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcag |
54657348 |
T |
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| Q |
112 |
caagagatcggtcttgatcttgctcctgcgataaaaaccaattttatgtgaatgtatctaaacataaatttactttagttcaattcacttttattcaaaa |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54657347 |
caagagatcggtcttgatcttgctcctgtgataaaaaccaattttatgtgaatgtatctaaacataaatttactttagttctattcacttttattcaaaa |
54657248 |
T |
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| Q |
212 |
tcagttctttttaactcgattctatcaaactaattttaattactgcataaccaaacacaaactaattatagcttcttga |
290 |
Q |
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| T |
54657247 |
tcagttctttttaactcgattctatcaaactaattttaattactgcataaccaaacacaatctaattacagcttcttga |
54657169 |
T |
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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 43733470 - 43733389
Alignment:
| Q |
43 |
gtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcagcaagagatcggtc |
124 |
Q |
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| T |
43733470 |
gtgaagtgtttgtagcctcccaaagcttggtataacgactcttccacaaactccaaagaatcatggcagccagaggtcggtc |
43733389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 28570745 - 28570860
Alignment:
| Q |
12 |
acatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcag |
111 |
Q |
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||||||| |||| |||||||||||| ||| || |||||||| |||||||||||||||||||||||| ||||||| | | |||||||||||| |||| || |
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| T |
28570745 |
acatcatgagcataagagacaatgaaggtgggtcaagtgtttctagcctcccaaagcttggtattacgactcttctagagactccaaagaatcatggtag |
28570844 |
T |
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| Q |
112 |
caagagatcggtcttg |
127 |
Q |
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| T |
28570845 |
ccagaggtcggtcttg |
28570860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 8041347 - 8041398
Alignment:
| Q |
190 |
ttcaattcacttttattcaaaatcagttctttttaactcgattctatcaaac |
241 |
Q |
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||||||||||||||||||||||||| |||| | ||||| |||||||||||| |
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| T |
8041347 |
ttcaattcacttttattcaaaatcaattctctcaaactcaattctatcaaac |
8041398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 29928897 - 29928997
Alignment:
| Q |
12 |
acatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcag |
111 |
Q |
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||||||| |||| ||||||||||| ||| ||||||||| |||| | ||||||||| || |||| || |||||| ||||| |||||||| ||||||| |
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| T |
29928897 |
acatcatgagcatgagagacaatgaaggtgggtgaagtgtcactagctttccaaagcttcgtgttacgacacttccataaacttcaaagaatcatggcag |
29928996 |
T |
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| Q |
112 |
c |
112 |
Q |
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| T |
29928997 |
c |
29928997 |
T |
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