View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_22 (Length: 259)
Name: NF6995_low_22
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 35701323 - 35701208
Alignment:
| Q |
141 |
actaatcgtacatatacatgtcaatagnnnnnnnnnnggagagatatacatgccaatagttaattaacaaacttaccctttgatatatattttttctaac |
240 |
Q |
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| T |
35701323 |
actaatcgtacatatacatgtcaatagttttttt---ggagagatatacatgccaatagttaattaacaaacttaccctttgatatatattttttctaaa |
35701227 |
T |
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| Q |
241 |
aaatacccttttgatatat |
259 |
Q |
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||||||||||||||||||| |
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| T |
35701226 |
aaatacccttttgatatat |
35701208 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 35701449 - 35701377
Alignment:
| Q |
16 |
tttggtgttgtactagttttgtaattgacattgtgtactcttgtgttctatcaatacacttctggtgttaagt |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35701449 |
tttggtgttgtactagttttgtaattgacattgtgtactcttgtgttctatcaatacacttctagtgttaagt |
35701377 |
T |
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