View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_27 (Length: 240)
Name: NF6995_low_27
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 16178479 - 16178329
Alignment:
| Q |
81 |
tatgttaaccttttgtttccttacccttccttttttcctcttgcgcagaaatgtggctttcaacgaggaggaattttccactagcaagccaggaagcttc |
180 |
Q |
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| T |
16178479 |
tatgttaaccttttgtgtccttacccttctttttttc-tcttgcgcagaaatgtggctttcaacgaggaggaattttccactagcaagccaggaagcttc |
16178381 |
T |
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| Q |
181 |
tggagcattagaagcctaccatgttaaactgaaagccaaactttttgatgat |
232 |
Q |
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| T |
16178380 |
tggagcattagaagcctaccatgttaaactgaaagccaaactttttgatgat |
16178329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16178636 - 16178558
Alignment:
| Q |
1 |
acaattgtgtctttagttggtaagaagtgcccaagatggatctgagaagtatctttaaaagtttattagatactttttg |
79 |
Q |
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| T |
16178636 |
acaattgtgtctttagttggtaagaagtgctcaagatggatctgagaagtatctttaaaagttcattagatactttttg |
16178558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 16718668 - 16718775
Alignment:
| Q |
125 |
gcagaaatgtggctttcaacgaggaggaattttccactagcaagccaggaagcttctggagcattagaagcctaccatgttaaactgaaagccaaacttt |
224 |
Q |
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| T |
16718668 |
gcagaaatgtggctttcaacaatgagaaatgtgccactggcaagccaggaagcctctggagcattagaagcctaccatgttaaactgaaagctaaacttt |
16718767 |
T |
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| Q |
225 |
ttgatgat |
232 |
Q |
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| T |
16718768 |
ttgatgat |
16718775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 16732486 - 16732617
Alignment:
| Q |
100 |
cttacccttccttttttcctcttgcgcagaaatgtggctttcaacgaggaggaattttccactagcaagccaggaagcttctggagcattagaagcctac |
199 |
Q |
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| T |
16732486 |
cttacccttcctttcctc-tgttgtgcagaaatgtggctttcaacaatgagaaatgtgccagtggccagccaggaagcctctggagcattagaagcctac |
16732584 |
T |
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| Q |
200 |
catgttaaactgaaagccaaactttttgatgat |
232 |
Q |
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| T |
16732585 |
catgttaaactgaaagccaaactttttgatgat |
16732617 |
T |
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