View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_29 (Length: 234)
Name: NF6995_low_29
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 38370404 - 38370603
Alignment:
| Q |
20 |
atatccacaatatttggaattgtacacactggcgatggccatatttgttaatataattgacacgaattaaagtatatgaccactgaccacgatgccttga |
119 |
Q |
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| T |
38370404 |
atatccacaacatttggaattgtacacactggccatgcccattcttgttactacaattgacacgaattaaagtatatgaccagtgaccacgatgccttag |
38370503 |
T |
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| Q |
120 |
tgcacgtttgagcaacttctattccttttagccatnnnnnnntcctataactttggtataaatcatatcaaaagacccttttagtggcatctcatattct |
219 |
Q |
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| T |
38370504 |
tgcacgtttgagcaacttctattccttttagccataaaaaaatcctataactttggtatatatcatatcaaaagacccttttaatggcatctcattttct |
38370603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 38363937 - 38364131
Alignment:
| Q |
20 |
atatccacaatatttggaattgtacacactggcgatggccatatttgttaatataattgacacgaattaaagtatatgaccactgaccacgatgccttga |
119 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
38363937 |
atatccacaacatttggaattgtacacactggccatgcccattcttgttactacaattgacacgaattaaagtatatgaccagtgaccacgatgccttaa |
38364036 |
T |
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| Q |
120 |
tgcacgtttgagcaacttctattccttttagccatnnnnnnntcctataactttggtataaatcatatcaaaagacccttttagtggcatctcat |
214 |
Q |
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| T |
38364037 |
tgcacgtttgagcaacttctattccttttagctataaaaaaatcttataactttggtatatatcatatcaaaagacccttttagtggcatttcat |
38364131 |
T |
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