View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_3 (Length: 536)
Name: NF6995_low_3
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 30417392 - 30416872
Alignment:
| Q |
1 |
aatttgccacggcatcttggtcttgttctcatgcaaaagacacgtgttgtgttctgccacagcatgcaacaacattgcatctgtctcatgcctcttatta |
100 |
Q |
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| T |
30417392 |
aatttgccacggcatcttggtcttgttctcatgcaaaagacacgtgttgtgttctgccacagcatgcaacaacattgcatctgtctcatgcctcttatta |
30417293 |
T |
|
| Q |
101 |
atttttattaatttctccctctaaagtctaaactgcagttttagctatcttatctatgaaacttaactatccatctccatgggggaaaaccaaaaagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30417292 |
atttttattaatttctccctctaaagtctaaactgcagttttagctatcttatctatgaaacttaactatccatctccatgggggaaaaccaaaaagact |
30417193 |
T |
|
| Q |
201 |
catttgttttgcctacaccagcagacttactctacaacagcatggcctctgtcttttcccctttctactctcttctgacagtgacatctgagtcctacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30417192 |
catttgttttgcctacaccagcagacttactctacaacagcatggcctctgtcttttcccctttctactcacttctgacagtgacatctgagtcctacca |
30417093 |
T |
|
| Q |
301 |
tcatgatgggcaaaccaaagacaatgctccttcacaaatagcttatggtagcatagtattgcttaagaaactgggtctttgttttctgagtgctgcatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30417092 |
tcatgatgggcaaaccaaagacaatgctccttcacaaatagcttatggtagcatagtattgcttaagaaactgggtctttgttttctgagtgctgcatat |
30416993 |
T |
|
| Q |
401 |
gtgtgtatgattctgttctttgttctgattctggcttctgtggttggtgttgggttggttcggttttgggtggaggaacctgtcattgttaatgaaagtt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30416992 |
gtgtgtatgattctgttctttgttctgattctggcttctgtggttggtgttgggttggttcggttttgggtggaggaacctgtcattgttaatgaaagtt |
30416893 |
T |
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| Q |
501 |
tgtattttgattacactgatg |
521 |
Q |
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||||||||||||||||||||| |
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| T |
30416892 |
tgtattttgattacactgatg |
30416872 |
T |
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