View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_30 (Length: 228)
Name: NF6995_low_30
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 20165591 - 20165397
Alignment:
| Q |
14 |
ggacatcatttatatcccttctaacaagaatctgcttaagtgaatgacacttgaattgacttaaacacttatgtgtatagcaaggaactgaaccaaaatc |
113 |
Q |
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| T |
20165591 |
ggacatcatttatatcccttctaacaagaatctgcttaagtgaatgacacttgaattgacttaaacacttatgtgtatagcaaggaactgaaccaaaatc |
20165492 |
T |
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| Q |
114 |
tttatggagtaaaacaaaagcataagaaagaaaagttagacatctccacaggaattagatattattactcattgcattgatattcaatacaaataaac |
211 |
Q |
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| T |
20165491 |
tttatggagtaaaacaaaagcataagaaaaaaaagttagacatatccacaggaattagat---attactcattgcattgatattcaatacaaataaac |
20165397 |
T |
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