View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_6 (Length: 481)
Name: NF6995_low_6
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 42138391 - 42137933
Alignment:
| Q |
17 |
tcagtgatgaggagtttgaagtcagaagttgatgcaggaaacatcaaaccatactgtttcgtggagatcaatggtctgaaattggcttcaccggagaata |
116 |
Q |
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| T |
42138391 |
tcagtgatgaggagtttgaagtcagaagttgatgcaggaaacatcaaaccatactgtttcgtggagatcaatggtctgaaattggcttcaccggagaata |
42138292 |
T |
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| Q |
117 |
tttacaaggtgaagttcacaaatgttttactgtttttggttttatgaccaaattccttggttgccttatggttccgacttccaatactattttaggtcat |
216 |
Q |
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| T |
42138291 |
tttacaaggtgaagttcacaaatcttttactgtttttggttttatgaccaaattccttggttgccttatggttccgacttccaatactattttaggtcat |
42138192 |
T |
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| Q |
217 |
atatgaagcgttaaatggacacagggttggatggaaagaggctctccgtttgctaaatgagaggtttgtagaagggaagaaaactggtgaagaggctgac |
316 |
Q |
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| T |
42138191 |
atatgaagcattaaatggtcacagggttggatggaaagaggctctccgtttgctaaatgagaggtttgtagaagggaagaaaactggtgaagaggctgac |
42138092 |
T |
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| Q |
317 |
cgaccatgtattttgctcattgatgaacttgatcttcttgtaaccagaaaccagtcggtaactaacaaatcctgttgcaagaaacttgtcattaggtgtc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138091 |
cgaccatgtattttgctcattgatgaacttgatcttcttgtaaccagaaaccagtcggtaactaacaaatcctgttgcaagaaacttgtcattaggtgtc |
42137992 |
T |
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| Q |
417 |
cacattatttattatatgaaacaagattggctataactttcc-cttttcacaggttctg |
474 |
Q |
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| T |
42137991 |
cacgttatttattatatgaaacaagattggctataactttccatttttcacaggttctg |
42137933 |
T |
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