View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6995_low_9 (Length: 432)
Name: NF6995_low_9
Description: NF6995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6995_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 122 - 406
Target Start/End: Original strand, 1186343 - 1186619
Alignment:
| Q |
122 |
aatgcatatacttttgaggagtcaaactctttacttacttctcacatttgatatagactattttcacgtgtttggttttgcgtgccaccgtgcgtttttt |
221 |
Q |
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| T |
1186343 |
aatgcatatacttttgaggagtcaaactctttccttacttctcacatttcatatagactattttcgtgtgtttgttttcgcgtgccaccgtgcgtttttt |
1186442 |
T |
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| Q |
222 |
cacttctgcaatctgtagcttcacaattatcacagcgagaagacattgagacgcgagaaaaatagtttggatgcgtatccaaacgaacacttattatacc |
321 |
Q |
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| T |
1186443 |
cacttctacaatctgtagcttcacaattatcacagcgagaagacattgagacgcgagaaaaatagtttggatgcgtatccaaacgaacacttattatacc |
1186542 |
T |
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| Q |
322 |
agattaaagaaaccatcatgtaagaactataccagattaaagcaaattttgtttagtcctttaacaagatattttcttatcatac |
406 |
Q |
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| T |
1186543 |
ag--------aaccatcatgtaataactataccagattaaagcaaattttgtttagtcctttaacaagatattttcttatcatac |
1186619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 1007066 - 1007149
Alignment:
| Q |
42 |
gaatgtgaattgaaggaagaacggtggcgccattaggggtttcatttggtgaatcatc---agaagaagaatctgatacatcaa |
122 |
Q |
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| T |
1007066 |
gaatgtgaattgaaggaagaacggtggcgacattaggggtttcatttggtgaatcatcagaagaagaagaatctgatacatcaa |
1007149 |
T |
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