View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6996_high_1 (Length: 1040)

Name: NF6996_high_1
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6996_high_1
NF6996_high_1
[»] chr8 (5 HSPs)
chr8 (74-1040)||(22512355-22513321)
chr8 (91-271)||(2688803-2688984)
chr8 (78-152)||(26377776-26377850)
chr8 (79-143)||(22922162-22922226)
chr8 (106-213)||(23573220-23573334)
[»] chr3 (13 HSPs)
chr3 (552-760)||(35723502-35723710)
chr3 (555-760)||(35707539-35707744)
chr3 (422-544)||(35707913-35708035)
chr3 (287-398)||(35724382-35724493)
chr3 (422-544)||(35723873-35723995)
chr3 (91-271)||(8536655-8536839)
chr3 (74-221)||(365858-366008)
chr3 (287-398)||(35726234-35726345)
chr3 (74-143)||(3064046-3064115)
chr3 (287-398)||(35708479-35708590)
chr3 (74-115)||(43304265-43304306)
chr3 (74-154)||(2472964-2473044)
chr3 (202-248)||(43304322-43304368)
[»] chr1 (10 HSPs)
chr1 (866-971)||(39609743-39609848)
chr1 (74-271)||(13441896-13442095)
chr1 (74-271)||(40805488-40805689)
chr1 (74-271)||(31915167-31915370)
chr1 (79-167)||(10926933-10927022)
chr1 (166-248)||(8220155-8220236)
chr1 (968-1025)||(48122739-48122796)
chr1 (97-154)||(8966030-8966087)
chr1 (79-213)||(10927792-10927929)
chr1 (74-107)||(50857751-50857784)
[»] chr4 (7 HSPs)
chr4 (78-227)||(22716287-22716440)
chr4 (78-227)||(22988777-22988930)
chr4 (102-271)||(10494553-10494726)
chr4 (100-154)||(9260315-9260369)
chr4 (199-248)||(6659756-6659805)
chr4 (91-167)||(7635027-7635103)
chr4 (96-143)||(13085423-13085470)
[»] chr5 (4 HSPs)
chr5 (756-838)||(27959202-27959284)
chr5 (78-249)||(18252071-18252246)
chr5 (79-189)||(21845202-21845316)
chr5 (102-143)||(19677630-19677671)
[»] chr2 (9 HSPs)
chr2 (91-271)||(280286-280469)
chr2 (74-163)||(27952632-27952721)
chr2 (106-268)||(32162254-32162419)
chr2 (74-212)||(31635975-31636117)
chr2 (79-193)||(35681913-35682031)
chr2 (79-143)||(2165637-2165701)
chr2 (102-227)||(33053094-33053222)
chr2 (74-143)||(22011145-22011214)
chr2 (79-152)||(23457389-23457461)
[»] scaffold0054 (3 HSPs)
scaffold0054 (91-262)||(48954-49127)
scaffold0054 (78-202)||(10349-10477)
scaffold0054 (95-220)||(37396-37524)
[»] chr7 (9 HSPs)
chr7 (74-270)||(1217467-1217665)
chr7 (74-167)||(4303146-4303239)
chr7 (74-220)||(13882990-13883141)
chr7 (78-229)||(11001085-11001240)
chr7 (91-227)||(1369488-1369629)
chr7 (78-225)||(8915432-8915582)
chr7 (80-154)||(1786426-1786500)
chr7 (207-271)||(11001256-11001320)
chr7 (360-398)||(3365578-3365616)
[»] chr6 (17 HSPs)
chr6 (78-212)||(22873500-22873638)
chr6 (78-202)||(22888953-22889081)
chr6 (78-202)||(22910496-22910624)
chr6 (106-246)||(34374074-34374218)
chr6 (91-228)||(18203109-18203249)
chr6 (79-210)||(12881715-12881849)
chr6 (799-841)||(14239275-14239317)
chr6 (79-143)||(3541960-3542024)
chr6 (79-143)||(30049630-30049694)
chr6 (79-143)||(30051917-30051981)
chr6 (74-121)||(11194401-11194448)
chr6 (102-221)||(12778692-12778813)
chr6 (90-157)||(32361106-32361173)
chr6 (195-271)||(8047760-8047836)
chr6 (100-143)||(8047661-8047704)
chr6 (360-398)||(16721733-16721771)
chr6 (105-154)||(18720020-18720069)
[»] scaffold0024 (2 HSPs)
scaffold0024 (182-271)||(144274-144363)
scaffold0024 (83-268)||(145364-145555)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-143)||(45928-45992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (164-229)||(15676-15741)


Alignment Details
Target: chr8 (Bit Score: 935; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 935; E-Value: 0
Query Start/End: Original strand, 74 - 1040
Target Start/End: Original strand, 22512355 - 22513321
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatgttgact 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22512355 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatgttgact 22512454  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaatt 273  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512455 catccaacgaacataagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaatt 22512554  T
Q  274 gatttaccaggatcccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512555 gatttaccaggatcccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcat 22512654  T
Q  374 taggatcttccacaaccattcctctgttgataagatcatttctaagtgctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaat 473  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512655 taggatcttccacaaccattcctctattgataagatcatttctaagtgctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaat 22512754  T
Q  474 tagatgcatggaactgagttgtctatgcgtggcaattataataggttcgacaacacaatgagtttttagccaataggaggaatcagaatcaggtgtgaag 573  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512755 tagatgcatggaactgagttgtctatgcatggcaattataataggttcgacaacacaatgagtttttagccaataggaggaatcagaatcaggtgtgaag 22512854  T
Q  574 acttgcttccattgtgccttgctattaataggtggtctagtgagctcaatatctggtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttg 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512855 acttgcttccattgtgccttgctattaataggtggtctagtgagctcaatatctggtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttg 22512954  T
Q  674 atccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagcataaatcatgatagtctagcatgaacaacttctcatgttccaactc 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22512955 atccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagcatagatcatgatagtctagcatgaacaacttctcatgttccaactc 22513054  T
Q  774 attacgtttcttttcataatgttgcttgagaactgaagcattattaaccagcttcatttcagcctccttctgttcaagttgcttgtccaattccttgaaa 873  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22513055 attacgtttcttttcataatgttgcttgagaactgaagcattattaaccagcttcatttcagcctccttctgttcaagttgcttgtccaattccttgaaa 22513154  T
Q  874 atgtgctgccaaaactgaaatgcacaaaagttagccatgaattccatctcctttcgaccagctaagattgtccggtcagcatagtactaatcaatgtaat 973  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  22513155 atgtgctgccaaaactgaaatgcacaaaagttagccatgaattccatctcctttcgaccagctaagattgtccggtcaccatagtagtaatcaatgtaat 22513254  T
Q  974 gaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatctcttggcagcagctcc 1040  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22513255 gaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatctcttggcagcagctcc 22513321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 2688984 - 2688803
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaaca 186  Q
    |||| ||||| ||| |||||||||||||| | |||||||||| | |||||||| ||| | |||   || ||||||||    ||||||| ||||| |||||    
T  2688984 aaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaatag--agtttcccatgcatgttgactcctccaatgaaca 2688887  T
Q  187 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
     |||| | ||||| |||||||||||| |||||||| |||||||  || ||| | ||||||||||| |||||||||| ||||||||    
T  2688886 tgagatcaccctcatggatcccattgggtgaaatgaaaagatggtttagttcg-aaaatatagtagttgcctttatcccattgaa 2688803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 26377850 - 26377776
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgat 152  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||||||| |||||| ||| ||||    
T  26377850 taaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 22922162 - 22922226
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  22922162 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 22922226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 23573334 - 23573220
Alignment:
Q  106 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagag---accgccct 198  Q
    |||||||||||||||| ||||||||||||| ||||| | ||| ||||||  |||||||    ||||||||||| ||||| |||||| ||   ||| ||||    
T  23573334 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaaaagaccaccaccct 23573235  T
Q  199 cctggatcccattga 213  Q
    ||||| |||||||||    
T  23573234 cctggttcccattga 23573220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 8e-64; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 552 - 760
Target Start/End: Complemental strand, 35723710 - 35723502
Alignment:
Q  552 ggaatcagaatcaggtgtgaagacttgcttccattgtgccttgctattaataggtggtctagtgagctcaatatctggtggcttcaaaatgccgtcacta 651  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||||||||||| ||||||||| || |||||||||||||||| ||||||    
T  35723710 ggaatcagaattaggtgtgaagacttgcttccactgtgacttgccatcaataggtggtctagtaagctcaatagctagtggcttcaaaatgccttcacta 35723611  T
Q  652 gtgaggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagcataaatcatgatagtctagcatga 751  Q
    ||||||||| ||||||  ||||||||||| | |||||  |||||| ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  35723610 gtgaggaagaatagtgttcttgatccatacaatgttgttccctcaatctctctcactttgcttacatatggtaagtaaaaatcatgatagtctagcatga 35723511  T
Q  752 acaacttct 760  Q
    |||||||||    
T  35723510 acaacttct 35723502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 555 - 760
Target Start/End: Complemental strand, 35707744 - 35707539
Alignment:
Q  555 atcagaatcaggtgtgaagacttgcttccattgtgccttgctattaataggtggtctagtgagctcaatatctggtggcttcaaaatgccgtcactagtg 654  Q
    |||||||  ||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||| || |||||||||| || || ||| ||||     
T  35707744 atcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctcaatagctagtggcttcaatattccttcagtagta 35707645  T
Q  655 aggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagcataaatcatgatagtctagcatgaaca 754  Q
    |||||| ||||||  |||||||||||||||||||  |||||| ||||||||||||||||||||||||| | | | ||||||| |||||||||||||||||    
T  35707644 aggaagaatagtgttcttgatccatatagtgttgttccctcaatctttctcactttgcttacatatggtatgtagaaatcataatagtctagcatgaaca 35707545  T
Q  755 acttct 760  Q
    ||||||    
T  35707544 acttct 35707539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 422 - 544
Target Start/End: Complemental strand, 35708035 - 35707913
Alignment:
Q  422 ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcgtggcaattataataggttc 521  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  35708035 ctttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaattataataggttc 35707936  T
Q  522 gacaacacaatgagtttttagcc 544  Q
    |||||||||||||||| ||||||    
T  35707935 gacaacacaatgagttcttagcc 35707913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 35724493 - 35724382
Alignment:
Q  287 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 386  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35724493 cccattgtttaattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaattattagcttcactccatgttgtgcattaggatcttccac 35724394  T
Q  387 aaccattcctct 398  Q
    | ||||||||||    
T  35724393 agccattcctct 35724382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 422 - 544
Target Start/End: Complemental strand, 35723995 - 35723873
Alignment:
Q  422 ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcgtggcaattataataggttc 521  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||| || || |||||||||||||||||    
T  35723995 ctttattgatttccatggtatatctcagatgtggatgcaataatctaaatattggatgtatggaactgagttgtctgtgtgttgcaattataataggttc 35723896  T
Q  522 gacaacacaatgagtttttagcc 544  Q
    |||||||||||||||| ||||||    
T  35723895 gacaacacaatgagttcttagcc 35723873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 8536655 - 8536839
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactcatccaacgaaca 186  Q
    |||| ||||| |||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||    |||||||| ||||| |||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaaca 8536754  T
Q  187 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    ||||| | ||||||||||||||||||||| |||||||||||||  || |||| |||| ||||| | |||||||||||||||||||    
T  8536755 agagatcaccctcctggatcccattgagtaaaatgcaaagatggtttcgtttaaaaactatagcagttgcctttatgccattgaa 8536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 365858 - 366008
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttg 170  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||  || ||||||  |||||||    ||||||    
T  365858 ctactaaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagcttccatgtatgttg 365957  T
Q  171 actcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatg 221  Q
    |||| ||||| ||||| |||||| |||||| ||||||||||||||||||||    
T  365958 actcttccaatgaacaggagaccaccctccgggatcccattgagtgaaatg 366008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 35726234 - 35726345
Alignment:
Q  287 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 386  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  || ||| | ||||||||||||| |||||||||||||    
T  35726234 cccattgtttgattgcatcccatatgagaagaccatcattggcaaaagggtagtcttcaattgctagctttagtccatgttgtgcactaggatcttccac 35726333  T
Q  387 aaccattcctct 398  Q
    | ||||||||||    
T  35726334 agccattcctct 35726345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 3064046 - 3064115
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  3064046 ctactaaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 3064115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 35708590 - 35708479
Alignment:
Q  287 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 386  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||| ||| ||||||||||||  || ||| | ||||||||||||| || |||||| |||    
T  35708590 cccattgtttgattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaattgctagctttagtccatgttgtgcactatgatctttcac 35708491  T
Q  387 aaccattcctct 398  Q
    | ||||||||||    
T  35708490 agccattcctct 35708479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 43304265 - 43304306
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctcc 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  43304265 ctactaaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 2472964 - 2473044
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 154  Q
    |||||||||||||||||||||  |  || |||||  |||||||| | ||||||||||||||||||||||| ||| ||||||    
T  2472964 ctactaaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataa 2473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 43304322 - 43304368
Alignment:
Q  202 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 248  Q
    ||||||||||||||||||||| |||||   |||||||||||||||||    
T  43304322 ggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 43304368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 6e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 866 - 971
Target Start/End: Original strand, 39609743 - 39609848
Alignment:
Q  866 ccttgaaaatgtgctgccaaaactgaaatgcacaaaagttagccatgaattccatctcctttcgaccagctaagattgtccggtcagcatagtactaatc 965  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||    
T  39609743 ccttgaaaatgtgctgccaaaactgaaatgcacaaaagttagccatgaattccatctcctttcgaccagctaagattgtccggtcaccataatagcaatc 39609842  T
Q  966 aatgta 971  Q
    ||||||    
T  39609843 aatgta 39609848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 13441896 - 13442095
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgtt 169  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||   | |||||| ||| ||||||  |||||||    ||||||    
T  13441896 ctactaaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgtt 13441993  T
Q  170 gactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattg 269  Q
    ||||| ||||| || ||||||| |  |||||||||||||||||||||||||||||||||   ||||||||||||||| |  | || ||||||| ||||||    
T  13441994 gactcctccaatgagcaagagatcatcctcctggatcccattgagtgaaatgcaaagatagtttggtttgaaaaataaaacagtttcctttataccattg 13442093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 40805689 - 40805488
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgtt 169  Q
    |||| |||||| |||  ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||| || ||||||| || |||     |||| |    
T  40805689 ctacaaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgat 40805590  T
Q  170 gactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattg 269  Q
    ||||| ||| | ||||||| || | |||||||| ||| |||||| |||||||||||||||| ||| |||| | ||||||| | ||| |||||| ||||||    
T  40805589 gactcctccgatgaacaagggatcaccctcctgaatctcattgaatgaaatgcaaagatgatttgatttggagaatatagcagttgtctttatcccattg 40805490  T
Q  270 aa 271  Q
    ||    
T  40805489 aa 40805488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 31915370 - 31915167
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctc---ctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---ca-t 166  Q
    ||||||||||||||||||||| ||| ||||||||||||   |||||||||| |||||||| ||||||||||||  || | ||||||   ||||   || |    
T  31915370 ctactaaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaataagagttttccattcatt 31915271  T
Q  167 gttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgcca 266  Q
    |||||||| ||||| |||||||||| |  |||||||||||| ||||||||||||  |||||||  |||||||| ||||||| |   |||||||||| |||    
T  31915270 gttgactcctccaatgaacaagaga-ctacctcctggatccgattgagtgaaatctaaagatggtttggtttgtaaaatattgatgttgcctttatccca 31915172  T
Q  267 ttgaa 271  Q
    |||||    
T  31915171 ttgaa 31915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 10927022 - 10926933
Alignment:
Q  79 aaattactaataaaactc-tcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 167  Q
    ||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  | |||||||||    
T  10927022 aaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatg 10926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 8220236 - 8220155
Alignment:
Q  166 tgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 248  Q
    ||||||||| ||||  |||||||||||  ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||    
T  8220236 tgttgactcctccagtgaacaagagacgaccctcctggatcccattgagtgaaatgcatagatggc-tggtttgaataatata 8220155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 968 - 1025
Target Start/End: Original strand, 48122739 - 48122796
Alignment:
Q  968 tgtaatgaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatct 1025  Q
    |||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||    
T  48122739 tgtaatgaattgagttgtaataaacttccactgaatcacagtctgaaacaatatatct 48122796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 8966030 - 8966087
Alignment:
Q  97 tcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 154  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataa 8966087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 10927929 - 10927792
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactc 174  Q
    ||||||||||  |||| ||||| || ||||||||||||| ||| ||||||||||||||||||||| ||| | ||||  || ||| |||    ||||||||    
T  10927929 aaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactc 10927830  T
Q  175 atccaacgaacaagagaccgccctcctggatcccattga 213  Q
     | |||  ||||||||||| ||||||| |||||||||||    
T  10927829 ttacaataaacaagagacc-ccctcctagatcccattga 10927792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 50857751 - 50857784
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcag 107  Q
    ||||||||||||||||||||| ||||||||||||    
T  50857751 ctactaaattactaataaaaccctcctgcatcag 50857784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 22716440 - 22716287
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 173  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||    
T  22716440 taaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgact 22716341  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaaga 227  Q
    | ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  22716340 cctccaatgaacaagagaccaccctcctgaatcacattgagtgaaatgcaaaga 22716287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 22988777 - 22988930
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 173  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||    
T  22988777 taaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgact 22988876  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaaga 227  Q
    | ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  22988877 cctccaatgaacaagagaccaccctcctgaatcacattgagtgaaatgcaaaga 22988930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 102 - 271
Target Start/End: Complemental strand, 10494726 - 10494553
Alignment:
Q  102 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 197  Q
    ||||||||| ||| || ||| |||||||||||| | |||||| ||  ||||||  |||||||||||    | ||||| ||||| |||||||||||| |||    
T  10494726 catcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaagagaccaccc 10494627  T
Q  198 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    |  || || ||| ||||||||||||||||||   ||||||| |||||||||| | ||||| |||| ||||||||    
T  10494626 ttttgaattccactgagtgaaatgcaaagatagtttggtttaaaaaatatagcagttgcccttatcccattgaa 10494553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 9260369 - 9260315
Alignment:
Q  100 tgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 154  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  9260369 tgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataa 9260315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 6659756 - 6659805
Alignment:
Q  199 cctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 248  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||    
T  6659756 cctggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 6659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 7635103 - 7635027
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 167  Q
    |||||||||  ||||||||||||||| |||| |||||||||||||| | |||| ||| | |||| ||||| ||||||    
T  7635103 aaactctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatg 7635027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 13085423 - 13085470
Alignment:
Q  96 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||| |||||||||| |||| |||| |||||||||||||||||||||    
T  13085423 ctcctacatcagtctcttccatctctgaagaactcgaccccgagttct 13085470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 756 - 838
Target Start/End: Complemental strand, 27959284 - 27959202
Alignment:
Q  756 cttctcatgttccaactcattacgtttcttttcataatgttgcttgagaactgaagcattattaaccagcttcatttcagcct 838  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27959284 cttctcatgttccaactcattaagtttcttttcataatgttgcttgagaactgaagcattattaaccagcttcatttcagcct 27959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 18252246 - 18252071
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 173  Q
    |||| ||||||  |||| |||||||||||| |||||| |||||| ||||||| ||||||||||||| ||||||||||  ||||| |    ||||| ||||    
T  18252246 taaaatactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggact 18252147  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatag 249  Q
    | ||||| | |||||||||| |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||    
T  18252146 cctccaatggacaagagaccaccctcctgaatcccatttagtgaaatgcaaagatggtttggtttgaaaaatatag 18252071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 21845202 - 21845316
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 174  Q
    |||||||||| ||||| ||| |||||||||||  ||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    |||||||||||    
T  21845202 aaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactc 21845301  T
Q  175 atccaacgaacaaga 189  Q
     ||||| ||||||||    
T  21845302 ctccaatgaacaaga 21845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 19677630 - 19677671
Alignment:
Q  102 catcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttct 19677671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 280286 - 280469
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaaca 186  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  ||||||     |||||||| || ||||| ||||     
T  280286 aaactcttctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac- 280384  T
Q  187 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    |||||||  ||| |||||||||||||||||||||||| |||||  ||| |||| ||||||||| | |||| ||||||||||||||    
T  280385 agagaccatccttctggatcccattgagtgaaatgcatagatggtttgatttggaaaatatagcagttgcttttatgccattgaa 280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 27952632 - 27952721
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc 163  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    
T  27952632 ctactaaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 32162254 - 32162419
Alignment:
Q  106 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccctcct 201  Q
    ||||||||||| |||| || ||||| |||  ||||||| ||| ||||||  |||||||||||    ||||||| || || |||||||||||| |||||||    
T  32162254 agtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgactc-tctaatgaacaagagaccaccctcct 32162352  T
Q  202 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 268  Q
     |||||||||||||||||||  ||||||  ||| |||| ||||||||||| ||||||||||||||||    
T  32162353 tgatcccattgagtgaaatgagaagatggtttgctttggaaaatatagtagttgcctttatgccatt 32162419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 31636117 - 31635975
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgtt 169  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||  ||||||||| |||  |||||  || ||||    ||||||    
T  31636117 ctactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgtt 31636018  T
Q  170 gactcatccaacgaacaagagaccgccctcctggatcccattg 212  Q
    ||||| ||||| |||||||||  | ||| || |||||||||||    
T  31636017 gactcctccaatgaacaagagcacacccacccggatcccattg 31635975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 35682031 - 35681913
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 174  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||  || ||||||  ||||| |    |||||||||||    
T  35682031 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactc 35681932  T
Q  175 atccaacgaacaagagacc 193  Q
     | ||| ||||||||||||    
T  35681931 cttcaatgaacaagagacc 35681913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 2165701 - 2165637
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  2165701 aaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 2165637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 33053222 - 33053094
Alignment:
Q  102 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaacaagagaccgccc 197  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||  ||||||     ||||| ||||| || ||  ||||||||||| |||    
T  33053222 catcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaagagaccaccc 33053124  T
Q  198 tcctggatcccattgagtgaaatgcaaaga 227  Q
    ||||| ||||||||||||| ||||||||||    
T  33053123 tcctgaatcccattgagtggaatgcaaaga 33053094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 22011214 - 22011145
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    |||||||||||   ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  22011214 ctactaaattaaagataaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttct 22011145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 23457461 - 23457389
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgat 152  Q
    |||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||   |||||||||| ||| ||||    
T  23457461 aaattactaagaaaac-ctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 8e-27; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 91 - 262
Target Start/End: Complemental strand, 49127 - 48954
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaaca 186  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||| | | |||||   ||||||||||| ||| | |||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaaca 49028  T
Q  187 agagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttat 262  Q
     |||| | ||| || ||||||||||||||||||| |||  | |  |||||||||||||||||| | ||||||||||    
T  49027 cgagaacacccacccggatcccattgagtgaaatacaa--aaggtttggtttgaaaaatatagcagttgcctttat 48954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 10477 - 10349
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 173  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  10477 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgact 10378  T
Q  174 catccaacgaacaagagaccgccctcctg 202  Q
    | ||||| |||||||||||  ||||||||    
T  10377 cctccaatgaacaagagacaaccctcctg 10349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 37524 - 37396
Alignment:
Q  95 tctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaacaagag 190  Q
    |||||| |||||||||||||||||||| |||||||||| ||| | |||||||| |||||| | |||||||   ||||||||||| ||| | ||||  |||    
T  37524 tctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagcttccatgcatgttgactcttcctatgaaccggag 37426  T
Q  191 accgccctcctggatcccattgagtgaaat 220  Q
    | |||||  | |||||||||||||| ||||    
T  37425 aacgcccaaccggatcccattgagtaaaat 37396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 1217467 - 1217665
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttg 170  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||   || ||||||  || || |   ||||| |    
T  1217467 ctactgaattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatttcatgcatgtcg 1217565  T
Q  171 actcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattga 270  Q
      || |||||  ||||||||||| |||||||||||||||| || ||||||| ||||||    ||||||||||||||||| | |||||||||| |||||||    
T  1217566 tgtcctccaattaacaagagaccaccctcctggatcccatagaatgaaatgtaaagatagtctggtttgaaaaatatagcagttgcctttatcccattga 1217665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 4303239 - 4303146
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 167  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  4303239 ctactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 4303146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 13882990 - 13883141
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc------atg 167  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||| | ||||  || ||| |      |||    
T  13882990 ctactaaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatg 13883088  T
Q  168 ttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaat 220  Q
    ||| ||| |||||  ||||||||||| ||||||||||||||||||| ||||||    
T  13883089 ttggctcctccaataaacaagagaccaccctcctggatcccattgaatgaaat 13883141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 11001085 - 11001240
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgact 173  Q
    |||| ||||||  |||| ||||| |||||||||||||||||||| |||||||||||||| | |||| ||| ||||||  |||||||    |||||| |||    
T  11001085 taaaatactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaact 11001184  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatg 229  Q
    | ||||| ||| |||||| |  |||||||||||||||||||||||||| |||||||    
T  11001185 cctccaatgaaaaagagatcatcctcctggatcccattgagtgaaatgtaaagatg 11001240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 1369629 - 1369488
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc----atgttgactcatccaacgaac- 185  Q
    |||||||  ||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||  ||||||||    |||||||||| ||||| ||||     
T  1369629 aaactcttgtgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaaca 1369530  T
Q  186 aagagaccgccctcctggatcccattgagtgaaatgcaaaga 227  Q
    ||| |||| ||||||  ||||||||||| |||||| ||||||    
T  1369529 aagcgaccaccctccacgatcccattgaatgaaattcaaaga 1369488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 8915432 - 8915582
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttgactc 174  Q
    |||| ||||||  |||| ||||| ||||||||||||||| |||| ||||||| |||||||| |||| ||| | |||| ||||| ||   |||||||||||    
T  8915432 taaaatactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagctcccatgcatgttgactc 8915531  T
Q  175 atccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaa 225  Q
     ||| | ||||||||||||  ||| || ||| |||||| ||||||||||||    
T  8915532 ctccgatgaacaagagaccaaccttctagatgccattgggtgaaatgcaaa 8915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 1786500 - 1786426
Alignment:
Q  80 aattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 154  Q
    ||||||||| |||||  |||| ||| |||||||||||||||| |||||||||||| |||||||| ||| ||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataa 1786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 11001256 - 11001320
Alignment:
Q  207 ccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    ||||||||||||||| |||||||  ||| |||| ||||||||  | |||||||||||||||||||    
T  11001256 ccattgagtgaaatgtaaagatggtttgttttggaaaatataacagttgcctttatgccattgaa 11001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 3365578 - 3365616
Alignment:
Q  360 tccatgttgtgcattaggatcttccacaaccattcctct 398  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  3365578 tccatgttgtgcactaggatcttccacagccattcctct 3365616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 7e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 22873638 - 22873500
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 173  Q
    ||||||| ||| ||||| ||||| |||||||||| ||||||||||| ||| |||| ||| |||||| ||||||||||  |||||||||||    ||||||    
T  22873638 taaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgact 22873539  T
Q  174 catccaacgaacaagagaccgccctcctggatcccattg 212  Q
    | ||||| |||||||||||  ||||||||||||||||||    
T  22873538 cctccaatgaacaagagacaaccctcctggatcccattg 22873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 22889081 - 22888953
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 173  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  22889081 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgact 22888982  T
Q  174 catccaacgaacaagagaccgccctcctg 202  Q
    | ||||| |||||||||||  ||||||||    
T  22888981 cctccaatgaacaagagacaaccctcctg 22888953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 22910624 - 22910496
Alignment:
Q  78 taaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgact 173  Q
    ||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||    
T  22910624 taaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgact 22910525  T
Q  174 catccaacgaacaagagaccgccctcctg 202  Q
    | ||||| |||||||||||  ||||||||    
T  22910524 cctccaatgaacaagagacaaccctcctg 22910496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 34374074 - 34374218
Alignment:
Q  106 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccctcct 201  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| ||||||  || ||||    ||||||||||| ||||| |||||||||||| | ||| |    
T  34374074 agtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaagagaccactctctt 34374173  T
Q  202 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaata 246  Q
    ||||||||||||||||| |||  |||||  ||| |||||||||||    
T  34374174 ggatcccattgagtgaattgcggagatggtttgatttgaaaaata 34374218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 18203249 - 18203109
Alignment:
Q  91 aaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaaca 186  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||| ||||||| ||| | ||||  || || |||||    ||||||| || || |||||    
T  18203249 aaaccctcctacatcagtctcctccacctctgaagaactcgaccc-gagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaaca 18203151  T
Q  187 agagaccgccctcctggatcccattgagtgaaatgcaaagat 228  Q
    ||||||| ||||||| ||||||||| |||||||||| |||||    
T  18203150 agagaccaccctcctagatcccattcagtgaaatgccaagat 18203109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 12881849 - 12881715
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactc 174  Q
    ||||||||||  |||| ||||| ||||||||||||||||||   ||||||||||||||||| ||| |||  |||||||| |||||    ||||||||||     
T  12881849 aaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgataagaa-cttcccatgcatgttgactt 12881751  T
Q  175 atccaacgaacaagagaccgccctcctggatcccat 210  Q
     | ||| |||||||||||| ||||||||||||||||    
T  12881750 cttcaatgaacaagagaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 799 - 841
Target Start/End: Complemental strand, 14239317 - 14239275
Alignment:
Q  799 ttgagaactgaagcattattaaccagcttcatttcagcctcct 841  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14239317 ttgagaactgaagcattattaaccagcttcatttcagcctcct 14239275  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 3542024 - 3541960
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  3542024 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 3541960  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 30049694 - 30049630
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30049694 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 30049630  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 30051981 - 30051917
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30051981 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 30051917  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 11194448 - 11194401
Alignment:
Q  74 ctactaaattactaataaaactctcctgcatcagtctcctccacctct 121  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11194448 ctactaaattactaagaaaactctcctacatcagtctcctccacctct 11194401  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 12778692 - 12778813
Alignment:
Q  102 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 197  Q
    |||||||||||||||||||| ||||||| |||||| | |||| ||| |||||   || ||||    ||||||||||| ||||| |||||||||||  |||    
T  12778692 catcagtctcctccacctctgaagaacttgaccccaaattctcattctgatag--agtttcctttgcatgttgactcctccaatgaacaagagacaaccc 12778789  T
Q  198 tcctggatcccattgagtgaaatg 221  Q
    || ||||||||||| |||||||||    
T  12778790 tcttggatcccattaagtgaaatg 12778813  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 32361173 - 32361106
Alignment:
Q  90 aaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaa 157  Q
    ||||| ||||| ||| ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataagaa 32361106  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 8047760 - 8047836
Alignment:
Q  195 ccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    ||||||| ||||||||||||| ||||| |||||||  ||  |||||||||||||| |||| || |||||||| ||||    
T  8047760 ccctcctcgatcccattgagtaaaatgtaaagatggtttaatttgaaaaatatagcaatttccattatgccagtgaa 8047836  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 8047661 - 8047704
Alignment:
Q  100 tgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttct 8047704  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 16721771 - 16721733
Alignment:
Q  360 tccatgttgtgcattaggatcttccacaaccattcctct 398  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  16721771 tccatgttgtgcactaggatcttccacagccattcctct 16721733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 18720069 - 18720020
Alignment:
Q  105 cagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 154  Q
    ||||||||||||||| | |||||||||||||||| |||| ||| ||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataa 18720020  T

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Target: scaffold0024 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 144274 - 144363
Alignment:
Q  182 gaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 271  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||  ||| |||||||||||||||| |||||||||| ||||||||    
T  144274 gaacaagagacgacccttctggatcccattgaatgaaatgcaaagatggtttgatttgaaaaatatagtagttgcctttatcccattgaa 144363  T

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Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 268
Target Start/End: Complemental strand, 145555 - 145364
Alignment:
Q  83 tactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagct-tcc---ca-tgttgactcatc 177  Q
    |||||||||||| ||||| |||||||||||||||||||  ||||||| || |||||||| ||||| ||||||  || | |||   || ||||||||| |     
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  178 caacgaacaagag--accgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 268  Q
    ||| |||||||||  ||  | || |||||||||||||||| |||| |||| |||  ||| |||||||||||||| | |||||||||| |||||    
T  145456 caatgaacaagagacactactcttctggatcccattgagtaaaatacaaatatggtttgatttgaaaaatatagcagttgcctttatcccatt 145364  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 45928 - 45992
Alignment:
Q  79 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttct 143  Q
    ||||||||||  || | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45928 aaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttct 45992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 15741 - 15676
Alignment:
Q  164 catgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatg 229  Q
    ||||||||||| ||||| ||||| |||||| ||||||  | ||||||||| ||||||| |||||||    
T  15741 catgttgactcctccaatgaacaggagaccaccctccaaggtcccattgaatgaaatgaaaagatg 15676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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