View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6996_high_4 (Length: 274)
Name: NF6996_high_4
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6996_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 22513298 - 22513542
Alignment:
| Q |
13 |
aatatatctcttggcagcagctccacgacaacaaatatcaggtggcttaggcgggagtggaggttgtgtcgatagattttctatcttttgatcttcactt |
112 |
Q |
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| T |
22513298 |
aatatatctcttggcagcagctccacgacaacaaatatcaggtggcttaggcgggagtggaggttgtgtcgatagattttctatcttttgatcttcagtt |
22513397 |
T |
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| Q |
113 |
acttgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgttcacatccatatcccaatcttccttgacagaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513398 |
acttgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgttcacatccatatcccaatcttccttgacagaat |
22513497 |
T |
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| Q |
213 |
tacattgtgtaattataccgcaaccattgttctctttttcattca |
257 |
Q |
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| T |
22513498 |
tacattgtgtaattataccgcaaccattgttctctttttcattca |
22513542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 42313865 - 42313703
Alignment:
| Q |
87 |
gattttctatcttttgatcttcacttacttgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgttcacatc |
186 |
Q |
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| T |
42313865 |
gattttctatcttttgatcttcacttatatgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgtccacatc |
42313766 |
T |
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| Q |
187 |
catatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
249 |
Q |
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| T |
42313765 |
catatcccagtcttccttgacagaatcacaccgtttagttataccgcaaccatttttctcttt |
42313703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 42309897 - 42309733
Alignment:
| Q |
88 |
attttctatcttttgatcttcacttacttgtaaagtattggcagtatgcttctggcattctttatt---tttagatggtaaaactaaagacttgttcaca |
184 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||| || ||||||||| ||| | || | |||| |||| |
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| T |
42309897 |
attttctatcttttgatcttcattaacttgtaaagtattggcaacatgcttctggtattcttcgttgagtttagatggaaaagttgaacagttgtccaca |
42309798 |
T |
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| Q |
185 |
tccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
249 |
Q |
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| T |
42309797 |
tccatatcctggtcttccttgacagaactacaccgtgtaattttaccgcaacagctgttctcttt |
42309733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 42308856 - 42308788
Alignment:
| Q |
181 |
cacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
249 |
Q |
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||||||||||||| |||| |||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
42308856 |
cacatccatatcctcgtctttcttgacagaaccgcactgtgtaattataccgcaaccgttgttctcttt |
42308788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 42308677 - 42308597
Alignment:
| Q |
171 |
aagacttgttcacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttttt |
251 |
Q |
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|||| |||| ||||||||||||| |||| |||||||||| ||| ||||||||| |||| ||||| || |||||||||| |
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| T |
42308677 |
aagagttgtccacatccatatcctggtctttcttgacagaaccacactgtgtaattgtaccacaaccgtttttctcttttt |
42308597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 13884016 - 13884072
Alignment:
| Q |
24 |
tggcagcagctccacgacaacaaatatcaggtggcttaggcgggagtggaggttgtg |
80 |
Q |
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| T |
13884016 |
tggcagcaactccacgacaacataaatcaggtggcttaggagggggtggaggttgtg |
13884072 |
T |
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