View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6996_high_6 (Length: 241)

Name: NF6996_high_6
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6996_high_6
NF6996_high_6
[»] chr7 (6 HSPs)
chr7 (1-225)||(42785365-42785589)
chr7 (1-232)||(4341717-4341948)
chr7 (1-137)||(19803545-19803681)
chr7 (1-226)||(21957954-21958179)
chr7 (158-226)||(3081666-3081734)
chr7 (161-226)||(3078222-3078287)
[»] chr6 (11 HSPs)
chr6 (1-232)||(29934005-29934236)
chr6 (1-232)||(33295589-33295819)
chr6 (1-215)||(5249438-5249652)
chr6 (14-232)||(28223091-28223313)
chr6 (1-137)||(34255006-34255142)
chr6 (1-142)||(8520216-8520357)
chr6 (14-143)||(26619924-26620053)
chr6 (14-143)||(26725837-26725966)
chr6 (82-137)||(28146260-28146315)
chr6 (1-75)||(28145542-28145616)
chr6 (87-143)||(5130521-5130577)
[»] chr4 (7 HSPs)
chr4 (1-232)||(2894005-2894236)
chr4 (14-232)||(4853024-4853242)
chr4 (1-136)||(14190929-14191064)
chr4 (14-143)||(1506566-1506695)
chr4 (14-143)||(13713700-13713829)
chr4 (38-137)||(5577059-5577158)
chr4 (161-226)||(6734922-6734987)
[»] chr2 (2 HSPs)
chr2 (1-232)||(2742777-2743008)
chr2 (135-232)||(2696447-2696544)
[»] chr8 (2 HSPs)
chr8 (9-226)||(5558397-5558614)
chr8 (1-137)||(20809915-20810063)
[»] chr5 (2 HSPs)
chr5 (9-226)||(41529019-41529236)
chr5 (23-232)||(37368331-37368538)
[»] chr1 (4 HSPs)
chr1 (14-232)||(14114205-14114423)
chr1 (1-137)||(51844786-51844922)
chr1 (164-226)||(15089015-15089077)
chr1 (164-226)||(22211623-22211685)
[»] scaffold0038 (1 HSPs)
scaffold0038 (14-232)||(23589-23811)
[»] chr3 (2 HSPs)
chr3 (1-137)||(14530141-14530277)
chr3 (152-226)||(28035190-28035264)
[»] scaffold0158 (1 HSPs)
scaffold0158 (1-137)||(26259-26395)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42785589 - 42785365
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  42785589 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatctcattaatctaacataatcataatccat 42785490  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42785489 tcccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaagcagcttatccacaatttgcagcttttgctagctccaaaac 42785390  T
Q  201 tccatagtccattttccaaaatagc 225  Q
    |||||||||||||||||||||||||    
T  42785389 tccatagtccattttccaaaatagc 42785365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4341717 - 4341948
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||  |||||||||||||||||  | | ||||||||||||||||| |||||||| |||  ||||||| ||||||||||||||||||||  ||    
T  4341717 tcatatggcatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattatccatattatctcaataatctaacataatcataattgat 4341816  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||||    
T  4341817 ccccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattgcaagcaacttatccacaatttgaagcttttgctagctccaaaac 4341916  T
Q  201 tccatagtccattttccaaaatagctgatgtc 232  Q
    |||||| ||||||||||||||||||| |||||    
T  4341917 tccataatccattttccaaaatagcttatgtc 4341948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 19803545 - 19803681
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19803545 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccat 19803644  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19803645 tcccaaaggtgggttctaagctaaaggaactcacctt 19803681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21958179 - 21957954
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||| |||||||||||||||||||||| || ||||||||||| || ||||||||||||| ||||||| |||| ||||||||||||||   ||    
T  21958179 tcatatggcataatagtcatgcttgcacaaaagacaagaaatcataaaaaaggtctaattattcatgttatctcaataatataacataatcataactgat 21958080  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtccc-gaaat-tacaaacagcttatccacaatttgcagcttttgctagctccaaa 198  Q
     |||| ||||||| |||||||||||||||||| || | | |  | |||| |||||  | ||||| |||||||| ||| |||||||||||||| |||||||    
T  21958079 ccccaaaggtgggctctaagctaaaggaactcgccgt-gaaacactccctgaaatggaaaaacaccttatccataatctgcagcttttgctatctccaaa 21957981  T
Q  199 actccatagtccattttccaaaatagct 226  Q
    ||| ||||  ||||||||||||||||||    
T  21957980 acttcata-accattttccaaaatagct 21957954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 3081666 - 3081734
Alignment:
Q  158 aaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    ||||||||||||||||||||||||||| | ||| ||| ||||||||||| ||  |||||||||||||||    
T  3081666 aaacagcttatccacaatttgcagcttcttctatctctaaaactccataatcacttttccaaaatagct 3081734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 3078287 - 3078222
Alignment:
Q  161 cagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||| ||  |||||||||||||||    
T  3078287 cagcttatccacaatttgcagcttcttctatctctaaaactccataatcacttttccaaaatagct 3078222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29934236 - 29934005
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29934236 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatctcattaatctaacataatcataatccat 29934137  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  29934136 tcccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaagcagcttatccacaatttgcagcttttgctagctccaaaaa 29934037  T
Q  201 tccatagtccattttccaaaatagctgatgtc 232  Q
    |||||| ||||||||||||||||||| |||||    
T  29934036 tccataatccattttccaaaatagcttatgtc 29934005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33295819 - 33295589
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||  || |||| ||| ||||||| | ||||||||||||| ||| ||||||||||||| ||||| | |||| || ||||||||||||| ||    
T  33295819 tcatatggcataacagacatgtttgtacaaaaggcaagtaatcataaaa-tggtctaattattcatgttatcttaataatgtagcataatcataatcgat 33295721  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
      ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  33295720 ctccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattgcaagcagcttatccacaatttgcagcttttactagctccaaaac 33295621  T
Q  201 tccatagtccattttccaaaatagctgatgtc 232  Q
    |||||| ||||||||||||||||||| |||||    
T  33295620 tccataatccattttccaaaatagcttatgtc 33295589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 5249652 - 5249438
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||| |||||||| ||    
T  5249652 tcatatggcataatagtcatgcttgcataaaagacaagtaatcataaaaatggtctaattattgatgttatctcaataatctaacatattcataatcgat 5249553  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||| ||||||||| || |||||||||    
T  5249552 ccccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgagattgcaggcagcttatccataattttcagcttttgttaactccaaaac 5249453  T
Q  201 tccatagtccatttt 215  Q
    | |||| ||||||||    
T  5249452 ttcataatccatttt 5249438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 28223091 - 28223313
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||| ||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||  || |||| | |||||    
T  28223091 tagttatgcttgcacaattggcaagtaatcataaaaatggtctaattattcatgttatctcgataatctaacataatcataattgatccccaaatgtggg 28223190  T
Q  114 ttctaagctaa----aggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtc 209  Q
    |||||||||||    || ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28223191 ttctaagctaattaaagtaactctccttggcattagtcccgaaattgcaagcagcttatccacaatttgcagcttttgctagctccaaaactccataatc 28223290  T
Q  210 cattttccaaaatagctgatgtc 232  Q
    ||||||||||||||||| |||||    
T  28223291 cattttccaaaatagcttatgtc 28223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 34255142 - 34255006
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  34255142 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccat 34255043  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34255042 tcccaaaggtgggttctaagctaaaggaactcacctt 34255006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8520216 - 8520357
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||| |||||||||||||||||||| | |  |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||||||||||| ||    
T  8520216 tcatatggcataatagtcatgcttgcacaaaagtcaaaaaatcataaaaatggtctaattatttatgttatctcaataatctaacctaatcataatcgat 8520315  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcat 142  Q
     |||| ||||| ||||||||||||||||||||||||||||||    
T  8520316 ccccaaaggtgcgttctaagctaaaggaactcaccttggcat 8520357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 26620053 - 26619924
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||  || |||| |||||||    
T  26620053 tagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatctcaataatctaacataattataattgatccccaaaggtggg 26619954  T
Q  114 ttctaagctaaaggaactcaccttggcatt 143  Q
    |||||||||||||||||||||||| |||||    
T  26619953 ttctaagctaaaggaactcaccttagcatt 26619924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 26725966 - 26725837
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||  || |||| |||||||    
T  26725966 tagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatctcaataatctaacataattataattgatccccaaaggtggg 26725867  T
Q  114 ttctaagctaaaggaactcaccttggcatt 143  Q
    |||||||||||||||||||||||| |||||    
T  26725866 ttctaagctaaaggaactcaccttagcatt 26725837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 28146260 - 28146315
Alignment:
Q  82 taacataatcataatccattcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    |||||||||||||||  || |||| |||||||||||||||||||||||||||||||    
T  28146260 taacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt 28146315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28145542 - 28145616
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctca 75  Q
    |||||| ||||  |||||||||||||||||  | | ||||||  ||||||||| ||||||||||||| |||||||    
T  28145542 tcatatggcatgatagtcatgcttgcacaatcggcgagtaattctaaaaatggtctaattattcatgttatctca 28145616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 5130577 - 5130521
Alignment:
Q  87 taatcataatccattcccagaggtgggttctaagctaaaggaactcaccttggcatt 143  Q
    ||||||||||  || |||| | ||||| ||||||||||||||||||||||| |||||    
T  5130577 taatcataattgatccccaaatgtgggctctaagctaaaggaactcaccttagcatt 5130521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2894236 - 2894005
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2894236 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatctcattaatctaacataatcataatccat 2894137  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  2894136 tcccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaagcaacttatccacaatttgcagcttttactagctccaaaac 2894037  T
Q  201 tccatagtccattttccaaaatagctgatgtc 232  Q
    |||||||||||||||||||||||||| |||||    
T  2894036 tccatagtccattttccaaaatagcttatgtc 2894005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 4853024 - 4853242
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||  || |||| |||||||    
T  4853024 tagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatctcaataatctaacataatcataattgatccccaaaggtggg 4853123  T
Q  114 ttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4853124 ttctaagctaaaggaactcaccttggcattagtcccgaaattgcaagcagcttatccacaatttgcagcttttgctagctccaaaactccataatccatt 4853223  T
Q  214 ttccaaaatagctgatgtc 232  Q
    ||||||||||||| |||||    
T  4853224 ttccaaaatagcttatgtc 4853242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14190929 - 14191064
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||| ||    
T  14190929 tcatatggcataatagtcatgcttgcacaaaaggcgagtaatcataaaaatggtctaattattcatgttatctcaataatctagcataatcataatcgat 14191028  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacct 136  Q
      ||| ||||||||||||||||||||||||||||||    
T  14191029 ctccaaaggtgggttctaagctaaaggaactcacct 14191064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 1506566 - 1506695
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||  || |||| |||||||    
T  1506566 tagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatctcaataatctaacataattataattgatccccaaaggtggg 1506665  T
Q  114 ttctaagctaaaggaactcaccttggcatt 143  Q
    |||||||||||||||||||||||| |||||    
T  1506666 ttctaagctaaaggaactcaccttagcatt 1506695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 13713700 - 13713829
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  | |  ||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||  || |||| |||||||    
T  13713700 tagtcatgcttgcacaatcggcaggtaatcataaaaatggtttaattattcatattatctcaataatctaacataatcataattgatccccaaaggtggg 13713799  T
Q  114 ttctaagctaaaggaactcaccttggcatt 143  Q
    || ||||| ||||||||||||||| |||||    
T  13713800 ttataagcgaaaggaactcaccttagcatt 13713829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 5577158 - 5577059
Alignment:
Q  38 gtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    |||||| ||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||  || |||| |||||| ||||||||||||||||||||||||    
T  5577158 gtaatcctaaaaatggtctaattattcatgttatgtcaataatctaacataatcataattgatccccaaaggtggattctaagctaaaggaactcacctt 5577059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 6734987 - 6734922
Alignment:
Q  161 cagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    |||||||||| ||||||||||||| | ||| ||||||||||||||| ||  |||||||||||||||    
T  6734987 cagcttatccccaatttgcagcttcttctatctccaaaactccataatcatttttccaaaatagct 6734922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2743008 - 2742777
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  2743008 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatctcattaaactaacataatcatgatccat 2742909  T
Q  101 tcccagaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     
T  2742908 tcccaaaggtgggttctaagctaaaggaactcaccttggcattagtcccgaaatttcaagcagcttatccacaatttgcagcttttgctagctccaaaaa 2742809  T
Q  201 tccatagtccattttccaaaatagctgatgtc 232  Q
    |||||| ||||||||||||||||||| |||||    
T  2742808 tccataatccattttccaaaatagcttatgtc 2742777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 2696544 - 2696447
Alignment:
Q  135 cttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagctgatgtc 232  Q
    ||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  2696544 cttggcattagtcccgaaattgcaagcagcttattcacaattttcagcttttgctaactccaaaactccataatccattttccaaaatagcttatgtc 2696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 5558397 - 5558614
Alignment:
Q  9 catagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagag 108  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  5558397 catagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccattcccaaag 5558496  T
Q  109 gtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagt 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||||||||| |    
T  5558497 gtgggttctaaactaaaggaactcaccttggcattagtcccgaaattgcaagcagcttatccaaaattttcagcttttgctagcttcaaaactccataat 5558596  T
Q  209 ccattttccaaaatagct 226  Q
    ||||||||||||||||||    
T  5558597 ccattttccaaaatagct 5558614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20810063 - 20809915
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcatta------------atctaacata 88  Q
    |||||| ||||  |||||||||||||||||  | |  |||||||||||||||| ||||||||||||| ||||||| ||            ||||||||||    
T  20810063 tcatatggcatgatagtcatgcttgcacaatcggcaggtaatcataaaaatggtctaattattcatgttatctcaatatctaacataataatctaacata 20809964  T
Q  89 atcataatccattcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    ||||||||  || |||| |||||||||||||||||||||||||||||||    
T  20809963 atcataattgatccccaaaggtgggttctaagctaaaggaactcacctt 20809915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 41529019 - 41529236
Alignment:
Q  9 catagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagag 108  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  41529019 catagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccattcccaaag 41529118  T
Q  109 gtgggttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagt 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||||||||| |    
T  41529119 gtgggttctaaactaaaggaactcaccttggcattagtcccgaaattgcaagcagcttatccaaaattttcagcttttgctagcttcaaaactccataat 41529218  T
Q  209 ccattttccaaaatagct 226  Q
    ||||||||||||||||||    
T  41529219 ccattttccaaaatagct 41529236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 37368538 - 37368331
Alignment:
Q  23 ttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtgggttctaagct 122  Q
    ||||||||||| | ||||||||||||| ||| ||||||||||||| ||||| | ||||||| ||||||||||||| ||  ||| |||||||||| |||||    
T  37368538 ttgcacaaaaggcaagtaatcataaaa-tggtctaattattcatgttatcttaataatctagcataatcataatcgatctccaaaggtgggttcaaagct 37368440  T
Q  123 aaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaat 222  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  37368439 aaaggaactcaccttggaattagtcccgaaattgcaagcagcttatccaaaatttgcagcttttgctag-tccaaaactccataatccattttccaaaat 37368341  T
Q  223 agctgatgtc 232  Q
    |||| |||||    
T  37368340 agcttatgtc 37368331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 14114423 - 14114205
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||||||||||||||||  |   ||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||  || |||| |||||||    
T  14114423 tagtcatgcttgcacaatcggaaagtaatcataaaaatggtctaattgttcatgttatctcaataatctaacataatcataattgatccccaaaggtggg 14114324  T
Q  114 ttctaagctaaaggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14114323 ttctaagctaaaggaactcaccttggcattagtcccgaaattgcaagcagcttatccacaatttgcagcttttgctagctccaaaactccataatccatt 14114224  T
Q  214 ttccaaaatagctgatgtc 232  Q
    ||||||||||||| |||||    
T  14114223 ttccaaaatagcttatgtc 14114205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 51844786 - 51844922
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| ||||  |||||||||||||||||  | | |||||||||||| | |  ||||||||||||| ||||||| |||||||| |||||||||||  ||    
T  51844786 tcatatggcatgatagtcatgcttgcacaatcggcaagtaatcataaagaggatctaattattcatgttatctcaataatctaatataatcataattgat 51844885  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacctt 137  Q
     |||| |||||||||||||||||||||||||||||||    
T  51844886 ccccaaaggtgggttctaagctaaaggaactcacctt 51844922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 15089015 - 15089077
Alignment:
Q  164 cttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    ||||||||||||||||||||| | ||| ||| ||||||||||| ||  |||||||||||||||    
T  15089015 cttatccacaatttgcagcttcttctatctctaaaactccataatcacttttccaaaatagct 15089077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 22211623 - 22211685
Alignment:
Q  164 cttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    ||||||||||||||||||||| | ||| ||| ||||||||||| ||  |||||||||||||||    
T  22211623 cttatccacaatttgcagcttcttctatctctaaaactccataatcacttttccaaaatagct 22211685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 23589 - 23811
Alignment:
Q  14 tagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccattcccagaggtggg 113  Q
    |||| ||||||||||||  | | ||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||  || |||| | |||||    
T  23589 tagttatgcttgcacaattggcaagtaatcataaaaatggtctaattattcatgttatctcgataatctaacataatcataattgatccccaaatgtggg 23688  T
Q  114 ttctaagctaa----aggaactcaccttggcattagtcccgaaattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtc 209  Q
    |||||||||||    || ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23689 ttctaagctaattaaagtaactctccttggcattagtcccgaaattgcaagcagcttatccacaatttgcagcttttgctagctccaaaactccataatc 23788  T
Q  210 cattttccaaaatagctgatgtc 232  Q
    ||||||||||||||||| |||||    
T  23789 cattttccaaaatagcttatgtc 23811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14530277 - 14530141
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14530277 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccat 14530178  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    ||||| |||||||||||||||||||||||||||||||    
T  14530177 tcccaaaggtgggttctaagctaaaggaactcacctt 14530141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 28035190 - 28035264
Alignment:
Q  152 aattacaaacagcttatccacaatttgcagcttttgctagctccaaaactccatagtccattttccaaaatagct 226  Q
    |||| ||| |||||||||||||||||||||||| ||||  || ||||||||| || ||  ||||| |||||||||    
T  28035190 aattgcaagcagcttatccacaatttgcagcttctgctttctacaaaactccgtaatcacttttcgaaaatagct 28035264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 26395 - 26259
Alignment:
Q  1 tcatattgcatagtagtcatgcttgcacaaaagactagtaatcataaaaatggactaattattcatgatatctcattaatctaacataatcataatccat 100  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26395 tcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatctcattaatctaacataatcataatccat 26296  T
Q  101 tcccagaggtgggttctaagctaaaggaactcacctt 137  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  26295 tcccaaaggcgggttctaagctaaaggaactcacctt 26259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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