View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6996_low_3 (Length: 387)
Name: NF6996_low_3
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6996_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 53539898 - 53539549
Alignment:
| Q |
19 |
ttccttagcatatgcatcactgattttttgcttcagaatgtatttcccaggtttaataggcgtaagcttctttagtccaacagtttgggctcccgctttt |
118 |
Q |
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| T |
53539898 |
ttccttaccatatccatcactgaatttttgcttcagaatgtatttcccaggtttaataggcgtaagcttcttcagtccaacagtttgggctcccgctttt |
53539799 |
T |
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| Q |
119 |
gagttagaagatacatccactacaattatactcattnnnnnnnnntcaattgaaccatactaaacaaatgatagatggaatacaatatatatagatcagt |
218 |
Q |
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| T |
53539798 |
gatttagaagatacatccactacaattatactcattaaaaaaaa-tcaattgaaccatactaaacaaatgatagatggaatacaatatatatagatcagt |
53539700 |
T |
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| Q |
219 |
ttaattttgcatataccgttagtaatgtcggacaaagggttcattccactctgcactttccgcctcttgttaggaagcattttctgagatacatgcggat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53539699 |
ttaattttgcatataccgttagtaatgtcggacaaagggttcattccactctgcactttctgcctcttgttaggaagcattttctgagatacatgcggat |
53539600 |
T |
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| Q |
319 |
tggttaaaattccattgagtatgcttctaaaacagatgtcatatcttagat |
369 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53539599 |
tggttaaaattccattaagtatgcttctaaaacagatgtcatatcttagat |
53539549 |
T |
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