View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6996_low_4 (Length: 274)
Name: NF6996_low_4
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6996_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 10316125 - 10315910
Alignment:
| Q |
29 |
aattcatggatcattttatataacaattaggagagggattggattatgctcttgtgcattttccttatgtttatattagt-----gtgggtctgttttat |
123 |
Q |
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| T |
10316125 |
aattcatggatcatat-atataacaattaggagagggattggattatgctcttgtgcattttccttatgtttatattagttagttgtgggtctgttttat |
10316027 |
T |
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| Q |
124 |
taattcattttcttat--gtatttttattaacatctgcttttgtgtaattaattcaaggtttgtttgtaatataagaatatattagtatagtttaaagta |
221 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10316026 |
taattcattttcttatatgtatttttattaacatctgcttttgtgtaattaattcaaggtttgtttgtaatataagaatatattagtatagttttaagta |
10315927 |
T |
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| Q |
222 |
cttgtattgtatacata |
238 |
Q |
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||||||||||||||||| |
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| T |
10315926 |
cttgtattgtatacata |
10315910 |
T |
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