View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6996_low_6 (Length: 269)

Name: NF6996_low_6
Description: NF6996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6996_low_6
NF6996_low_6
[»] chr4 (4 HSPs)
chr4 (19-246)||(19512922-19513149)
chr4 (19-86)||(24752427-24752494)
chr4 (21-86)||(23658883-23658946)
chr4 (19-86)||(13883779-13883846)
[»] chr3 (5 HSPs)
chr3 (23-86)||(6460388-6460451)
chr3 (23-86)||(30992782-30992845)
chr3 (19-86)||(15776838-15776904)
chr3 (19-86)||(3261853-3261922)
chr3 (19-55)||(3291185-3291221)
[»] chr1 (2 HSPs)
chr1 (19-86)||(9131155-9131222)
chr1 (19-86)||(18513286-18513352)
[»] chr8 (3 HSPs)
chr8 (18-55)||(15113758-15113795)
chr8 (19-55)||(40391941-40391977)
chr8 (19-86)||(14993495-14993561)
[»] chr7 (1 HSPs)
chr7 (19-61)||(11315968-11316012)
[»] scaffold0088 (1 HSPs)
scaffold0088 (19-55)||(35028-35064)
[»] chr5 (1 HSPs)
chr5 (19-55)||(32040144-32040180)
[»] scaffold0578 (1 HSPs)
scaffold0578 (102-164)||(4558-4620)
[»] chr2 (2 HSPs)
chr2 (102-164)||(5007058-5007120)
chr2 (19-55)||(16094083-16094119)
[»] chr6 (1 HSPs)
chr6 (19-86)||(19566375-19566442)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 19513149 - 19512922
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataacaagggaacccacttactcatcattgatcaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19513149 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataacaagggaacccacttactcatcattgatcaca 19513050  T
Q  119 aaattgacacatcaattgcacgaaattcatttaaaaacagaaacaagtttaatacatcaattaataacacctataaccctataattcacaaaaataaagg 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||    
T  19513049 aaattgacacatcaattgaacgaaattcatttaaaaacagaaacaagtttaatacatcaattaataatacctataactctataattcacaaaaataaggg 19512950  T
Q  219 agagaaagaaactaggataaggacccct 246  Q
    ||||||||||||||||||||||||||||    
T  19512949 agagaaagaaactaggataaggacccct 19512922  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 24752427 - 24752494
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    |||||||||||||||||||||||| ||| |||||||||||| || ||||||| |||||||||||||||    
T  24752427 tctatcccaattaactaaataaccccactcaaacatgccaataactgatttaattcaaataaaaataa 24752494  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 23658946 - 23658883
Alignment:
Q  21 tatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    |||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||||||| |||||    
T  23658946 tatcccaattaactaa-taatc-cacccaaacatgccaaaaactgatttaattcaaataacaataa 23658883  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 13883846 - 13883779
Alignment:
Q  19 tctatcccaattaactaaat-aacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    |||||||||||||||||||  || | ||||||||||||||||||| | ||||| ||| |||||||||||    
T  13883846 tctatcccaattaactaaaagaaacccacccaaacatgccaaaaactaatttaattc-aataaaaataa 13883779  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 6460388 - 6460451
Alignment:
Q  23 tcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||  ||||||||||||||    
T  6460388 tcccaattaactaaataatctcactcaaacatgccaaaaactgatttaaatcaaataaaaataa 6460451  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 30992845 - 30992782
Alignment:
Q  23 tcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||| ||||| |||||||||||||||||||||||| | ||||| |||||||||||||||    
T  30992845 tcccaattatctaaacaacctcacccaaacatgccaaaaactaatttaattcaaataaaaataa 30992782  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 15776904 - 15776838
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||||||||||||| |||||||||||||||||   ||||  |||||| |||||||||||||||    
T  15776904 tctatcccaattaactaaacaacctcacccaaacatg-ttaaaacggatttaattcaaataaaaataa 15776838  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 3261922 - 3261853
Alignment:
Q  19 tctatcccaattaactaaataa--cctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||||||||||||| ||  |  ||||||||||||||||||| | ||||| |||||||||||||||    
T  3261922 tctatcccaattaactaaaaaaaactccacccaaacatgccaaaaactaatttaattcaaataaaaataa 3261853  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3291185 - 3291221
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatg 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3291185 tctatcccaattaactaaacaacctcacccaaacatg 3291221  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9131222 - 9131155
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||||||||| |||||| | ||| |||||||||||||||||||||||  ||||||||||||||    
T  9131222 tctatcccaattaacaaaataatcccactcaaacatgccaaaaattgatttaaatcaaataaaaataa 9131155  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 18513352 - 18513286
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||||||||||||| ||| |||||||||||||  ||||  | ||||| |||||||||||||||    
T  18513352 tctatcccaattaactaaacaacatcacccaaacatgttaaaacat-atttaattcaaataaaaataa 18513286  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 15113758 - 15113795
Alignment:
Q  18 atctatcccaattaactaaataacctcacccaaacatg 55  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15113758 atctatcccaattaactaaacaacctcacccaaacatg 15113795  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 40391941 - 40391977
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatg 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40391941 tctatcccaattaactaaacaacctcacccaaacatg 40391977  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 14993561 - 14993495
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||||||||||||||||| ||| |||||||||||||   ||||  |||||| |||||||||||||||    
T  14993561 tctatcccaattaactaaacaacatcacccaaacatg-ttaaaacagatttaattcaaataaaaataa 14993495  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 11315968 - 11316012
Alignment:
Q  19 tctatcccaattaactaaataa--cctcacccaaacatgccaaaa 61  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  11315968 tctatcccaattaactaaataaaacctcacccaaacatgccaaaa 11316012  T

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Target: scaffold0088 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 35064 - 35028
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatg 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35064 tctatcccaattaactaaacaacctcacccaaacatg 35028  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32040144 - 32040180
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatg 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32040144 tctatcccaattaactaaacaacctcacccaaacatg 32040180  T

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Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 4620 - 4558
Alignment:
Q  102 actcatcattgatcacaaaattgacacatcaattgcacgaaattcatttaaaaacagaaacaa 164  Q
    |||||||||||| | || |||||||||||||||||||| || ||||| || ||||| ||||||    
T  4620 actcatcattgaccgcataattgacacatcaattgcacaaagttcatatataaacataaacaa 4558  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 5007058 - 5007120
Alignment:
Q  102 actcatcattgatcacaaaattgacacatcaattgcacgaaattcatttaaaaacagaaacaa 164  Q
    |||||||||||| | || |||||||||||||||||||| || ||||| || ||||| ||||||    
T  5007058 actcatcattgaccgcataattgacacatcaattgcacaaagttcatatataaacataaacaa 5007120  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16094083 - 16094119
Alignment:
Q  19 tctatcccaattaactaaataacctcacccaaacatg 55  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  16094083 tctatcccaattaactaaacaacctcactcaaacatg 16094119  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19566442 - 19566375
Alignment:
Q  19 tctatcccaattaactaaata-acctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 86  Q
    ||||| ||||||||||||| | ||| ||||||||||||||||||| | ||||| ||| |||||||||||    
T  19566442 tctataccaattaactaaaaataccccacccaaacatgccaaaaactaatttaattc-aataaaaataa 19566375  T

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