View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6997_high_2 (Length: 674)
Name: NF6997_high_2
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 14178346 - 14178655
Alignment:
| Q |
20 |
agaaagctagtgaaggatgaaactgagaaggctgtggatgcaatcaagtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatc |
119 |
Q |
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| T |
14178346 |
agaaaactagtgaaggatgaaactgagaaggctgtggatgcaatcaagtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatc |
14178445 |
T |
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| Q |
120 |
ttatatattcagtctgtctaatattgctaggtaaatggaaagacctac--ataaatgcatttatcatctgtaaagagaattttgaggtacttgaaaggaa |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
14178446 |
ttacatattcagtctgtctaatattgctaggtaaatggaaagacctacatataaatgcatttatcatctgtaaagagaattttaagatacttgaaaggaa |
14178545 |
T |
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| Q |
218 |
ttgtcaattttgaagttatgtacaaaagaaaagagaatgttagcttgacaggatggtttgactcggataatacatgagatacatatgacag-aaagagca |
316 |
Q |
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||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| |||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
14178546 |
ttgtcaattttgaagttctgtacaaaagtaaagagaacgttagcttgactcgatggtctgactcagataatacaggagatacatatgacagaaaagagca |
14178645 |
T |
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| Q |
317 |
cttcagggta |
326 |
Q |
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||||| |||| |
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| T |
14178646 |
cttcatggta |
14178655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 5144619 - 5144461
Alignment:
| Q |
57 |
atgcaatcaagtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatcttatatattcagtctgtctaatattgctaggtaaatg |
156 |
Q |
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| T |
5144619 |
atgcaagcaagtataagcagatagttagatgcttgatgtacttgcttgcgaccagacctgatcttgcatattcagtgtgttt--ggttgctagatacatg |
5144522 |
T |
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| Q |
157 |
gaaagacctacataaatgcatttatcatctgtaaagagaattttgaggtacttgaaaggaa |
217 |
Q |
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| T |
5144521 |
gagagacctactaaaatgcacctatcagctatcaaaagaattctgaggtacttgaaaggaa |
5144461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 2083438 - 2083610
Alignment:
| Q |
68 |
tataagcagatggttggatgcttgatgtaattacttgctacaagacatgatcttatatattcagtctgtctaatattgctaggtaaatggaaagacctac |
167 |
Q |
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|||| ||||||| |||| ||||||||||| || |||||||| |||| ||||||| ||||||||| ||| || | ||||| || |||||||| ||||| |
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| T |
2083438 |
tatatgcagatgattgggtgcttgatgtacttgcttgctaccagacctgatcttgcatattcagtatgttta--gtggctagatacatggaaaggcctac |
2083535 |
T |
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| Q |
168 |
ataaatgcatttatcatctgtaaagagaattttgaggtacttgaaaggaattgtcaattttgaagttatgtacaa |
242 |
Q |
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| T |
2083536 |
tgaaatgcagttatcagctattaaaagaattttgagatacttaaaaggaactatcagttttggagtcatatacaa |
2083610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 27888368 - 27888302
Alignment:
| Q |
66 |
agtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatcttatatattcagt |
132 |
Q |
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| T |
27888368 |
agtataaatagatggttggatgcttgatgtacttgcttgccaccagacttgatcttgcatattcagt |
27888302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 27947026 - 27946960
Alignment:
| Q |
66 |
agtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatcttatatattcagt |
132 |
Q |
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||||||| |||||||||||||||||||||| || ||||| || |||| ||||||| ||||||||| |
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| T |
27947026 |
agtataaatagatggttggatgcttgatgtacttgcttgccaccagacttgatcttgcatattcagt |
27946960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 28027269 - 28027203
Alignment:
| Q |
66 |
agtataagcagatggttggatgcttgatgtaattacttgctacaagacatgatcttatatattcagt |
132 |
Q |
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||||||| |||||||||||||||||||||| || ||||| || |||| ||||||| ||||||||| |
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| T |
28027269 |
agtataaatagatggttggatgcttgatgtacttgcttgccaccagacttgatcttgcatattcagt |
28027203 |
T |
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