View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6997_high_4 (Length: 411)
Name: NF6997_high_4
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41460866 - 41460999
Alignment:
| Q |
1 |
aaaatcaaatacaacttcacatgc---taatgttcatacataatcaatgaaaaatatccttcgcatgc-----cacattcaccaatacatccacttctct |
92 |
Q |
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| T |
41460866 |
aaaatcaaatacaacttcacatgctaataatgttcatacataatcaatgaaaaa-atccttcgcatgcaccaacacatccacacacacattaacttcact |
41460964 |
T |
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| Q |
93 |
ataaatgtgaagtgatagactcaaaacttctcatc |
127 |
Q |
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| T |
41460965 |
ataaacgtgaagtgatagactcaaaacttctcatc |
41460999 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 41461020 - 41461059
Alignment:
| Q |
357 |
ttgtcattagagcacatgttaataaagtagaggtaatgat |
396 |
Q |
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| T |
41461020 |
ttgtcattagagcacatgttaataaagtagaggtaatgat |
41461059 |
T |
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