View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6997_high_7 (Length: 239)
Name: NF6997_high_7
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 2237353 - 2237575
Alignment:
| Q |
18 |
agtattgcggtggtgc-gccaccggaggtggtccttggtaagggcctagtatgaaacataacaaattaattgacaaattcttattaacaatgttccaaag |
116 |
Q |
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| T |
2237353 |
agtattgcggtggtgccgccaccggaggtggtccttggtaagggcctagtatgaaacataacaaattaattgacaaattcttattaacaatgttccaaag |
2237452 |
T |
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| Q |
117 |
agaaaattttgataatctttcttaataaagaaagtttgatcaattgctacaaagtaaatgaatgttttttcaatgttggattgaaaggaaattcaaaatc |
216 |
Q |
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| T |
2237453 |
agaaaattttgataatctttcttaataaagaaagtttgatcaattgctacaaagtaaatgaatgttttttcaatgttgtattgaaaggaaattcaaaatc |
2237552 |
T |
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| Q |
217 |
taagaaagttttagtatataatt |
239 |
Q |
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| T |
2237553 |
taagaaagttttagtatataatt |
2237575 |
T |
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